View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19013_low_8 (Length: 399)
Name: NF19013_low_8
Description: NF19013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19013_low_8 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 111717 - 111343
Alignment:
| Q |
16 |
gagaaaaatattaacttaacaactaataaagaatac------attaacaatacactaattatttattcatagcatgatttgatgatacataaaagtggat |
109 |
Q |
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| T |
111717 |
gagaaaaatattaacttaacaactaataaagaataccagctgattaataattaac-aatacactaatcatagcatgatttgatgatatatacaggtggat |
111619 |
T |
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| Q |
110 |
atgagctcatttcatatggaaaggatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttgattttgaggataatctt |
209 |
Q |
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| T |
111618 |
atgagctcatttcatatggaaagaatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttgattttgaggataatctt |
111519 |
T |
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| Q |
210 |
ttcaattttttgaatacaaccatcgcaatgtaatctaatcttcaaaacgaccgtgttttgaaccgactggnnnnnnntaatttaaaacggttagtgagaa |
309 |
Q |
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| T |
111518 |
ttcaattttttgaatacaaccatcgcaatgcaatctaatcttcaaaacgaccgtgttttgaaccgactggaaaaaaataatttaaaacggttagtgagaa |
111419 |
T |
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| Q |
310 |
aaaagcgtggaggaacaagtctctttaacttaatcaacacggaaaaagtcaattctgaatgaattgcgatgaaatt |
385 |
Q |
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| T |
111418 |
aaaagcgtggaggaacaagtctctttaacttaatcaacacggaaaaagtcaattctgaatgaattgcgatgaaatt |
111343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 41143594 - 41143968
Alignment:
| Q |
16 |
gagaaaaatattaacttaacaactaataaagaatac------attaacaatacactaattatttattcatagcatgatttgatgatacataaaagtggat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||| || ||| || ||||||||||||||||||||| ||| | |||||| |
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| T |
41143594 |
gagaaaaatattaacttaacaactaataaagaataccagctgattaataattaac-aatacactaatcatagcatgatttgatgatatatacaggtggat |
41143692 |
T |
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| Q |
110 |
atgagctcatttcatatggaaaggatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttgattttgaggataatctt |
209 |
Q |
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| T |
41143693 |
atgagctcatttcatatggaaagaatcttaattaattaaaactaaagaccaaagtgctatgatgactagctaactaacctttgattttgaggataatctt |
41143792 |
T |
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| Q |
210 |
ttcaattttttgaatacaaccatcgcaatgtaatctaatcttcaaaacgaccgtgttttgaaccgactggnnnnnnntaatttaaaacggttagtgagaa |
309 |
Q |
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| T |
41143793 |
ttcaattttttgaatacaaccatcgcaatgcaatctaatcttcaaaacgaccgtgttttgaaccgactggaaaaaaataatttaaaacggttagtgagaa |
41143892 |
T |
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| Q |
310 |
aaaagcgtggaggaacaagtctctttaacttaatcaacacggaaaaagtcaattctgaatgaattgcgatgaaatt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41143893 |
aaaagcgtggaggaacaagtctctttaacttaatcaacacggaaaaagtcaattctgaatgaattgcgatgaaatt |
41143968 |
T |
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