View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19014_high_2 (Length: 651)
Name: NF19014_high_2
Description: NF19014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19014_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 172 - 536
Target Start/End: Original strand, 24533749 - 24534113
Alignment:
| Q |
172 |
catggcgtagaaatcgctctagacttgcgtaaggatttctatctttgattgcaaatccatattagtgcaactttttgtatcataatgtttgcaatagcaa |
271 |
Q |
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| T |
24533749 |
catggcgtagaaatcgctctagacttgcgtaaggatttctatctttgattgcaaatccatattagtgcaactttttgtatcataatgtttgcaataacaa |
24533848 |
T |
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| Q |
272 |
taatgtttagttacatgctaagccaatgttgcagggacattgaacttactctgatgattctagtcggttgcaaaatgttgaaatatttgtgtgcatgtta |
371 |
Q |
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| T |
24533849 |
taatgtttagttacatgctaagccaatgttgcagggacattgaacttactctgatgattctagtcggttgcaaaatgttgaaatatttgtgtgcgtgtta |
24533948 |
T |
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| Q |
372 |
aatttggaatttattgttagcttcacccaattattgtttgaagctcttagaatgcaacacactaagacttagatatacaatgtacagatctacaggctga |
471 |
Q |
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| T |
24533949 |
aatttggaatttattggtagcttcacccaattattgtttgaagctcttagaatgcaacacactaagacttagatatacaatgtacagatctacaggctga |
24534048 |
T |
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| Q |
472 |
ccaacggtaaccttctttatatgcaggagaaaaatatgggcatggggtgttagagatttgatata |
536 |
Q |
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| T |
24534049 |
ccaacggtaaccttctttatatgcaggagaaaaataggggcatggggtgttagagatttgatata |
24534113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 24544783 - 24544890
Alignment:
| Q |
290 |
taagccaatgttgcagggacattgaacttactctgatgattctagtcggttgcaaaatgttgaaatatttgtgtgcatgttaaatttggaatttattgtt |
389 |
Q |
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| T |
24544783 |
taagccaaggttgaagggacattgaacttattcggatgattctggttggtt---taatgtggaaatatttttgtacacattaaatttggaatttattcgt |
24544879 |
T |
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| Q |
390 |
agcttcaccca |
400 |
Q |
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| T |
24544880 |
agcctcaccca |
24544890 |
T |
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