View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19014_high_4 (Length: 255)
Name: NF19014_high_4
Description: NF19014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19014_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 8296929 - 8296706
Alignment:
| Q |
19 |
ttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggttttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8296929 |
ttaacctctgcattgctaatttcatgtcctgtatggtacttattcagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggttttta |
8296830 |
T |
|
| Q |
119 |
tttttgtttatatagaaaatgaattaggttggttttataactatgtctagtttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
8296829 |
tttttgtttatatagaaaatgaattaggttggttttataactatgtctggtttcctgtcactcatcttcaatgtttgaagtatgtaaaactatgtctgtt |
8296730 |
T |
|
| Q |
219 |
atattctgaaattttttcttgatg |
242 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
8296729 |
atattctgaaaatttttcttgatg |
8296706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 8300506 - 8300283
Alignment:
| Q |
19 |
ttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggttttta |
118 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8300506 |
ttaacctctgcattcctaattccatgtcctgtatggtaattattcagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggttttta |
8300407 |
T |
|
| Q |
119 |
tttttgtttatatagaaaatgaattaggttggttttataactatgtctagtttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8300406 |
tttttgtttatatagaaaatgaattaggttggttttataactatgtctggtttcctgtcactcattttcaatgtttgaagtatgtaaaactatgtctgtt |
8300307 |
T |
|
| Q |
219 |
atattctgaaattttttcttgatg |
242 |
Q |
| |
|
||||||| ||| ||| |||||||| |
|
|
| T |
8300306 |
atattctaaaaatttctcttgatg |
8300283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18279720 - 18279782
Alignment:
| Q |
19 |
ttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaagttt |
81 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
18279720 |
ttaacctctgcatagctaatttcatgtcctgtatggtacttattcagggatctgaaaaagttt |
18279782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 18279889 - 18279963
Alignment:
| Q |
168 |
gtttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatg |
242 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
18279889 |
gtttcctgtgcctcaacttcaaagtttgaagtatgcaaaactatgtctgttaaattctgaaaatttctcttgatg |
18279963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 8300571 - 8300517
Alignment:
| Q |
180 |
tcattttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttt |
234 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||| | ||||||||||| |||| |
|
|
| T |
8300571 |
tcattttcaaagtttgaagaatgaaaaactctgtctttaatattctgaaaatttt |
8300517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 1145132 - 1145074
Alignment:
| Q |
20 |
taacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaag |
78 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||||| |||||| || ||||| |
|
|
| T |
1145132 |
taacctctgctttgctaatttcatgtcttgtatggtaattattcagggaggtgcaaaag |
1145074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 21120969 - 21121004
Alignment:
| Q |
86 |
tcatcttataaacatgaagtagggtggtttttattt |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21120969 |
tcatcttataaacatgaagtaggctggtttttattt |
21121004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University