View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19014_low_1 (Length: 670)
Name: NF19014_low_1
Description: NF19014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19014_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 40 - 650
Target Start/End: Original strand, 14915789 - 14916405
Alignment:
| Q |
40 |
atgaagcccttataaaaattt-ggatatctagtatctcacatgattttgaaatcattgaagctgatatgtacatatatttatgtagcactatcattacgg |
138 |
Q |
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| T |
14915789 |
atgaagcccttataaattttttggatatctagtatctcacatgattttgaaatcattgaagatgatatgtacatatatttatgtagcactattattacgg |
14915888 |
T |
|
| Q |
139 |
ttttatatgtgaataacttgattatcattagttataagttttatgttgtgnnnnnnntcatatatatgtttgtggaattttatacattaagaacttttga |
238 |
Q |
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| T |
14915889 |
ttttatatgtgaataacttgattatcattagttataagttttatgttgtgaaaaaaatcatatatatgtttgtggaattttatacattaagaacttttga |
14915988 |
T |
|
| Q |
239 |
tgaagtaaagattattcttgaaattaagtttactatgaatatgtactagctagtattgggacaccaatgtgatactgagaggatcatgtggtactttaaa |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
14915989 |
tgaagtaaagattattcttgaaattaagtttactatgaatatgtactagctagtattgggacaccaatgtgata--gtgaggatcatgtggtactttaaa |
14916086 |
T |
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| Q |
339 |
aaggccatgaattcaagatcattac------nnnnnnnnttcattgtactaaaaagttgcaatgatgttaattattataaaaaagtttaccatgatacaa |
432 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14916087 |
aaggccatgaattcaagatcattacaaaaaaaaaaaaaaatcattgtactaaaaagttgcaatgatgttaattattataaaaaagtttaccatgatacaa |
14916186 |
T |
|
| Q |
433 |
gaaagctacaatgatgttgattagcttaccgttgtacttgaaaattacaatgatgcatggaataatctattaaattttcctaaataatacatgtgatttt |
532 |
Q |
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| T |
14916187 |
gaaagctacaatgatgttgattagcttaccattgtacttgaaaattacaatgatgcatggaataatctattaaattttcctaaataatacatgtgatttt |
14916286 |
T |
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| Q |
533 |
caaccatattgatcgattgagatagagtcatagctattacaaagtaaataa---gatgatcatatgagatatgaagaaatttgactggtccattgacaaa |
629 |
Q |
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||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14916287 |
caaccatattgatcgattgtgat--agtcataactattacaaagtaaataagatgatgatcatatgagatatgaagaaatttgactggtccattgacgaa |
14916384 |
T |
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| Q |
630 |
agaattagtaagagagagaga |
650 |
Q |
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| T |
14916385 |
agaattagtaagagagagaga |
14916405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 386 - 652
Target Start/End: Complemental strand, 48516190 - 48515921
Alignment:
| Q |
386 |
aagttgcaatgatgttaattattataaaaaagtttaccatgatacaagaaagctacaatgatgttgattagcttaccgttgtacttgaaaattacaatga |
485 |
Q |
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||||| |||||||||| | |||||| ||| |||||||||| || | ||| |||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
48516190 |
aagttacaatgatgttgactattatcaaagagtttaccattgtattaagaagttacaatgatgttgattagtttaccaatgtatttgaaaattacaatga |
48516091 |
T |
|
| Q |
486 |
tg---catggaataatctattaaattttcctaaataatacatgtgattttcaaccatattgatcgattgagatagagtcatagctattacaaagtaaata |
582 |
Q |
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|| ||||||||||||| || |||||||||||||||| || |||||| || |||||| ||||||||| ||||||| ||| || |||||||| |||||| |
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| T |
48516090 |
tgatgcatggaataatctgctagattttcctaaataataaatatgatttccagccatatcgatcgattgtgatagagccatggcaattacaaattaaata |
48515991 |
T |
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| Q |
583 |
agatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagagagagagatt |
652 |
Q |
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||||||||||||||| | | |||||| |||||| ||| || || |||| |||||||||||||| ||||| |
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| T |
48515990 |
agatgatcatatgaggtctaaagaaacttgactaatcctttaaccaaaggattagtaagagagatagatt |
48515921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 652
Target Start/End: Original strand, 6788609 - 6788693
Alignment:
| Q |
568 |
attacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagagagagagatt |
652 |
Q |
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|||| |||||||||||||||| ||||||| | | ||||||||||| |||| | ||||| ||| |||||||||||||| ||||| |
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| T |
6788609 |
attataaagtaaataagatgaacatatgatgtttaaagaaatttgattggtactttgacgaaaagattagtaagagagaaagatt |
6788693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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