View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19015_low_1 (Length: 627)

Name: NF19015_low_1
Description: NF19015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19015_low_1
NF19015_low_1
[»] chr4 (5 HSPs)
chr4 (10-627)||(39778506-39779124)
chr4 (30-91)||(39778361-39778422)
chr4 (22-80)||(29168960-29169018)
chr4 (31-100)||(40827695-40827763)
chr4 (22-138)||(17905142-17905257)
[»] chr5 (3 HSPs)
chr5 (332-581)||(5676748-5676997)
chr5 (57-140)||(6787751-6787834)
chr5 (58-119)||(4509742-4509803)
[»] chr3 (1 HSPs)
chr3 (22-115)||(35018484-35018576)
[»] chr1 (2 HSPs)
chr1 (22-94)||(40571592-40571661)
chr1 (38-94)||(19609169-19609224)
[»] chr7 (2 HSPs)
chr7 (38-94)||(6427025-6427080)
chr7 (22-115)||(42968150-42968242)
[»] chr6 (1 HSPs)
chr6 (34-94)||(24745752-24745811)
[»] chr2 (2 HSPs)
chr2 (30-90)||(7252240-7252298)
chr2 (22-65)||(21374085-21374128)


Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 10 - 627
Target Start/End: Original strand, 39778506 - 39779124
Alignment:
Q  10 cgactgatatgaataggctttgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcactt 109  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778506 cgacagatatgaataggctctgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcactt 39778605  T
Q  110 ataaacttatatttaggctttatctcatcgaatatgagactcctaacactagtcttgttaaaacagtttgacacatacatctaatcaaatcttatcacac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778606 ataaacttatatttaggctttatctcatcgaatatgagactcctaacactagtcttgttaaaacagtttgacacatacatctaatcaaatcttatcacac 39778705  T
Q  210 agatatttgtccactattttagataaaatataattagatgcatgtctaaaacnnnnnnn-atacagttaggatatatgatattaaactcgttttacatac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  39778706 agatatttgtccactattttagataaaatataattagatgcatgtctaaaacttttttttatacagttaggatatatgatattaaactcgttttacatac 39778805  T
Q  309 tgatgaatcttgactcttttgtggagcaggagatatttggaaagggaaggaaggatatagaagcacatgaagagcatgagaagagacttattttagagat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778806 tgatgaatcttgactcttttgtggagcaggagatatttggaaagggaaggaaggatatagaagcacatgaagagcatgagaagagacttattttagagat 39778905  T
Q  409 actagtgagccttatgccaagggagaagaatgcaatatctgtcagctttctttcactatggcttaaggcagcaatatatcttgagacaactgttgcttgc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778906 actagtgagccttatgccaagggagaagaatgcaatatctgtcagctttctttcactatggcttaaggcagcaatatatcttgagacaactgttgcttgc 39779005  T
Q  509 aggtttgatttggagagaaggatagccatgcaattaggacaggctgttttggatgatcttctttttccttcatttagcggcgacacatcgtttgatgtag 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39779006 aggtttgatttggagagaaggatagccatgcaattaggacaggctgttttggatgatcttctttttccttcatttagcggcgacacatcgtttgatgtag 39779105  T
Q  609 aaacagtgcaaagaatcat 627  Q
    |||||||||||||||||||    
T  39779106 aaacagtgcaaagaatcat 39779124  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 39778361 - 39778422
Alignment:
Q  30 tgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaagg 91  Q
    |||||||| ||||||||||||||||| ||||||||| |||||| |||||||| |||||||||    
T  39778361 tgataccagcttaaaattttgggttgggcctaactcaacccttacaaaaccagcttgtaagg 39778422  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 29169018 - 29168960
Alignment:
Q  22 ataggctttgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaacc 80  Q
    ||||||||| ||||||| ||  |||||||||||||||||||||| |||| | |||||||    
T  29169018 ataggctttaataccatattcgaattttgggttgagcctaactcaacccctacaaaacc 29168960  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 40827695 - 40827763
Alignment:
Q  31 gataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcg 100  Q
    |||||||||||||||||| || | ||||||||||  |||||| ||||| || |||||||||||| |||||    
T  40827695 gataccatcttaaaatttagg-tcgagcctaacttaacccttacaaaatcagcttgtaaggtgaggatcg 40827763  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 17905257 - 17905142
Alignment:
Q  22 ataggctttgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcacttataaacttatat 121  Q
    ||||||||| ||||||||||| ||||| || ||  ||||||||| | |||| | |||||  |||||||||||| |||   || ||||||||||||||| |    
T  17905257 ataggctttaataccatcttagaattt-ggcttaggcctaactcaagccttaccaaaccggcttgtaaggtgaggattacccccacttataaacttatgt 17905159  T
Q  122 ttaggctttatctcatc 138  Q
    | | || ||||||||||    
T  17905158 tcaagccttatctcatc 17905142  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 332 - 581
Target Start/End: Complemental strand, 5676997 - 5676748
Alignment:
Q  332 gagcaggagatatttggaaagggaaggaaggatatagaagcacatgaagagcatgagaagagacttattttagagatactagtgagccttatgccaaggg 431  Q
    |||||||| ||||||||||||||||||||| | || ||| ||    |||||||||| |||||  |||||||||||| | ||||||||||  | ||||  |    
T  5676997 gagcaggatatatttggaaagggaaggaagaagattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaag 5676898  T
Q  432 agaagaatgcaatatctgtcagctttctttcactatggcttaaggcagcaatatatcttgagacaactgttgcttgcaggtttgatttggagagaaggat 531  Q
    ||||||||||||| || || |||||||| ||  |   |||    ||||| ||||||||||| ||||| |||||||||||| |||||||||||| ||| ||    
T  5676897 agaagaatgcaatgtcagtaagctttctatctatgctgctacgtgcagcgatatatcttgatacaacagttgcttgcaggcttgatttggagaaaagaat 5676798  T
Q  532 agccatgcaattaggacaggctgttttggatgatcttctttttccttcat 581  Q
     || |||||||||||||| |||||| |||||||||||||  |||||||||    
T  5676797 ggcaatgcaattaggacaagctgttctggatgatcttctcattccttcat 5676748  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 6787834 - 6787751
Alignment:
Q  57 gcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcacttataaacttatatttaggctttatctcatcga 140  Q
    ||||||||| |||||| ||||||| |||||||| ||||||||   |||||||||||||||||| |  |||| | ||||||||||    
T  6787834 gcctaactcaacccttacaaaaccgacttgtaaagtgaagatttccctcacttataaacttatgtccaggcctgatctcatcga 6787751  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 4509803 - 4509742
Alignment:
Q  58 cctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcacttataaacttat 119  Q
    |||||||| |||| | |||||||| |||||||||||| ||||| || | |||||||||||||    
T  4509803 cctaactcaacccctacaaaaccagcttgtaaggtgatgatcgtcccctcttataaacttat 4509742  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 35018576 - 35018484
Alignment:
Q  22 ataggctttgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcacttataaac 115  Q
    ||||||| ||||| ||||||| |||||  ||||| ||||||||||| |||| |||| ||| |||||||||||| ||| | || |||||||||||    
T  35018576 ataggctctgatatcatcttagaatttgtggttgggcctaactcga-ccttacaaacccagcttgtaaggtgaggatggcccccacttataaac 35018484  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 40571661 - 40571592
Alignment:
Q  22 ataggctttgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtga 94  Q
    |||| ||||||||||||||||||  ||||| ||| ||||||||| ||| || |||||||||||||||||||||    
T  40571661 atagactttgataccatcttaaa--tttggattgggcctaactcaacc-ttacaaaaccaacttgtaaggtga 40571592  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 19609169 - 19609224
Alignment:
Q  38 tcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtga 94  Q
    ||||| |||||||||||||||||||||| | |||| |||||||  ||||||||||||    
T  19609169 tcttagaattttgggttgagcctaactc-aaccttacaaaaccggcttgtaaggtga 19609224  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 6427025 - 6427080
Alignment:
Q  38 tcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtga 94  Q
    ||||| |||||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  6427025 tcttagaattttgggttgagcctaactc-aatcttacaaaaccaacttgtaaggtga 6427080  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 42968150 - 42968242
Alignment:
Q  22 ataggctttgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtgaagatcgacctcacttataaac 115  Q
    |||| |||||||||||||||| |||||| ||||| ||  ||||  ||| || ||||||| ||||||||| ||||||| |  |||||||||||||    
T  42968150 atagactttgataccatcttagaattttaggttgggcagaactttacc-ttacaaaaccgacttgtaagctgaagattgcactcacttataaac 42968242  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 24745752 - 24745811
Alignment:
Q  34 accatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaaggtga 94  Q
    ||||||||| ||||| |||||||||| ||||| ||||||||||||||  ||||||||||||    
T  24745752 accatcttagaattt-gggttgagccgaactcaaccctttcaaaaccggcttgtaaggtga 24745811  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 7252298 - 7252240
Alignment:
Q  30 tgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaag 90  Q
    ||||||||||||| ||||| |||||||||||||||| |||| | |||||||||||||||||    
T  7252298 tgataccatcttagaattt-gggttgagcctaactcaaccc-tacaaaaccaacttgtaag 7252240  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 21374128 - 21374085
Alignment:
Q  22 ataggctttgataccatcttaaaattttgggttgagcctaactc 65  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  21374128 ataggctatgataccatcttagaattttggattgagcctaactc 21374085  T

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