View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19015_low_2 (Length: 404)
Name: NF19015_low_2
Description: NF19015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19015_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 2507943 - 2508127
Alignment:
| Q |
1 |
atggttgtcaaacttgcgagtagactcgtagatttgtacaaatttacgagtctaggaggcaaaaatgagtgatattgcgcatgaaatcaattttatgata |
100 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2507943 |
atggttgtcgaacttgcaagtagactcgtagatttgtacaaatttacgagtctaggaggcaaaaatgagtgatatcgcgcatgaaatcaattttatgata |
2508042 |
T |
|
| Q |
101 |
aacctgatatactagtggtaggctcatactgactcgaatagactcgtgaatctaaggcaagtttacgagtccataagcctttttg |
185 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |
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| T |
2508043 |
aacttgatatactagtggtagactcatactgactcgaatagactcgtgagtctaaggcgagtttatgagtccataaggctttttg |
2508127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 263 - 396
Target Start/End: Original strand, 2508202 - 2508335
Alignment:
| Q |
263 |
tcaatgaataatttaggaataactctcactttaatatcatcgacgacgaactcacttttacttcatagacgatattttttccttcattgacaatttttct |
362 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2508202 |
tcaatgaataatttaggaataactctcactctaatatcatcgacgacgaactcacttttacttcatagacgatattttttccttcattgacaatttttct |
2508301 |
T |
|
| Q |
363 |
ctggcattctcttgatatgagtcgcgttcatctc |
396 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
2508302 |
ctggcattctcttgatatgagtcgcgttcgtctc |
2508335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27137687 - 27137503
Alignment:
| Q |
1 |
atggttgtcaaacttgcgagtagactcgtagatttgtacaaatttacgagtctaggaggcaaaaatgagtgatattgcgcatgaaatcaattttatgata |
100 |
Q |
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|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27137687 |
atggttgtcgaacttgcaagtagactcgtagatttgtacaaatttacgagtctaggaggcaaaaatgagtgatatcgcgcatgaaatcaattttatgata |
27137588 |
T |
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| Q |
101 |
aacctgatatactagtggtaggctcatactgactcgaatagactcgtgaatctaaggcaagtttacgagtccataagcctttttg |
185 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |
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| T |
27137587 |
aacttgatatactagtggtagactcatactgactcgaatagactcgtgagtctaaggcgagtttatgagtccataaggctttttg |
27137503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 27137431 - 27137298
Alignment:
| Q |
263 |
tcaatgaataatttaggaataactctcactttaatatcatcgacgacgaactcacttttacttcatagacgatattttttccttcattgacaatttttct |
362 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27137431 |
tcaatgaataatttaggaataactctcactctaatatcatcgacgacgaactcacttttacttcatagacgatattttttccttcattgacaatttttct |
27137332 |
T |
|
| Q |
363 |
ctggcattctcttgatatgagtcgcgttcatctc |
396 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
27137331 |
ctggcattctcttgatatgagtcgcgttcgtctc |
27137298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25733029 - 25732959
Alignment:
| Q |
1 |
atggttgtcaaacttgcgagtagactcgtagatttgtacaaatttacgagtctaggaggcaaaaatgagtg |
71 |
Q |
| |
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|||||||||||||| ||||||||||||||||| | |||| | |||||||||||| ||||||||||||||| |
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| T |
25733029 |
atggttgtcaaactcgcgagtagactcgtagaatcgtacgagtttacgagtctataaggcaaaaatgagtg |
25732959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 1683713 - 1683779
Alignment:
| Q |
5 |
ttgtcaaacttgcgagtagactcgtagatttgtacaaatttacgagtctaggaggcaaaaatgagtg |
71 |
Q |
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||||||||||||| | |||| |||||||| ||| ||||||||||||||| ||| ||||||||||| |
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| T |
1683713 |
ttgtcaaacttgcaaatagattcgtagatccatacgaatttacgagtctagaaggtaaaaatgagtg |
1683779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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