View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19015_low_3 (Length: 401)
Name: NF19015_low_3
Description: NF19015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19015_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 26484268 - 26483898
Alignment:
| Q |
20 |
attctacctcctattaacggtaattttagcattaaaccatattaaaaaattgttatatgtaaaatgtttttacactatcaatcaatcatgatcgttggaa |
119 |
Q |
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| T |
26484268 |
attctacctcctattaacggttattttagcattaaaccatattaaaaaattgttatatgtaaaatgtttttacactatcaatcaatcatgatcgttggaa |
26484169 |
T |
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| Q |
120 |
taacttttataatcatacatattatgagtgtattgataatcacattttgttaaccaaataatgacaaattaagagaaaaatagtgaaagataagaattgt |
219 |
Q |
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| T |
26484168 |
taacttttataatcatacatattatgagtgtattgataatcacattttgttaaccaaataatgacaaattaagagaaaaatagtgaaagataagaattgt |
26484069 |
T |
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| Q |
220 |
gtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcaggcttatgattttgaatctctgaacctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484068 |
gtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcaggcttatgattttgaatctctgaacctt |
26483969 |
T |
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| Q |
320 |
ttgaattttccttggaaccaacatcgtcacaattttctctatttttcaactttgtattcttatttcccttt |
390 |
Q |
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| T |
26483968 |
ttgaattttccttggaaccaacatcatcacaattttctctatttttcaactttgtattcttatttcccttt |
26483898 |
T |
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Back To:
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 54615899 - 54615828
Alignment:
| Q |
221 |
tactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcag |
292 |
Q |
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|||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||| |
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| T |
54615899 |
tacttactctttcagctaagctatgactgtcggtggcttggccacgacgtgctcgaacatgaatgtaatcag |
54615828 |
T |
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