View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19015_low_6 (Length: 245)
Name: NF19015_low_6
Description: NF19015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19015_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 18500894 - 18500745
Alignment:
| Q |
17 |
accaggcatttttgtaagtgtaagtattgttagcaattacagggagaagaagaagaccaacgattcctgatacaaaacaaagcaagttgaaaaaacaaac |
116 |
Q |
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| T |
18500894 |
accaggcatttttagaagtgtaagtattgttagcaattacagggagaagaagaagaccaacgattcctgatacaaaacaaagcaagctgaaaaaacaaac |
18500795 |
T |
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| Q |
117 |
caacacatagttattcatccattctccaaattcaaattcaaattcaaact |
166 |
Q |
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| T |
18500794 |
caacacatagttattcatccattctccaaattcaaattcaaattcaaact |
18500745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 39380833 - 39380715
Alignment:
| Q |
35 |
tgtaagtattgttagcaattacagggagaagaagaagaccaacgattcctgatacaaaacaaagcaagttgaaaa-aacaaaccaacacatagttattca |
133 |
Q |
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| T |
39380833 |
tgtaagtattgttagcaagtataggaaggagaagaagagcaacgattccagataagaaacaaagcaagctgaaaataaccaaccaacac--agttattct |
39380736 |
T |
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| Q |
134 |
tccattctccaaattcaaattca |
156 |
Q |
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| T |
39380735 |
t--attctccaaattcagattca |
39380715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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