View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19016_high_1 (Length: 823)
Name: NF19016_high_1
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 353 - 807
Target Start/End: Original strand, 38097247 - 38097698
Alignment:
| Q |
353 |
attattgatgactctacttagagtcatttatctaattgcaacaacttagaggttgtattcactaggcgacaaactaatgatagtactcctgctttggcac |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097247 |
attattgatgactctacttagagtcatttatctaattgcaacaacttagaggttgtattcactaggcgacaaactaatgatagtactcctgctttggcac |
38097346 |
T |
|
| Q |
453 |
aaacttctttctcttatgctcctcgggtaattttcattcttctatatatgattgtgccatgaattcgtttgaaataataatacaagttaacttgatttga |
552 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38097347 |
aaacttctttctcttatgctcctcggataattttcattcttctatatatgattgtgccatgaattcgtttgaaata---atacaagttaacttgatttga |
38097443 |
T |
|
| Q |
553 |
ataaaataaaagcctatcaaatttcttttataagttgattcatcaatggagtatgaagaaaaataatttaggtgtgggttttattttaatgaaaataagt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097444 |
ataaaataaaagcctatcaaatttcttttataagttgattcatcaatggagtatgaagaaaaataatttaggtgtgggttttattttaatgaaaataagt |
38097543 |
T |
|
| Q |
653 |
ttaatgtaaaatttggtttaaaaaatacaatttacaagagccccaacaaactcaattgttggaacttcgggtgagaaagagcaggagttgcattggactc |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097544 |
ttaatgtaaaatttggtttaaaaaatacaatttacaagagccccaacaaactcaattgttggaacttcgggtgagaaagagcaggagttgcattggactc |
38097643 |
T |
|
| Q |
753 |
cttagcatcttcatagttatgggaacgattttgagaattgttgagatatggaaag |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097644 |
cttagcatcttcatagttatgggaacgattttgagaattgttgagatatggaaag |
38097698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 38096829 - 38096967
Alignment:
| Q |
17 |
tagggatggatgaggtgaagttaaaggaaacaaaagaggaaaagagggaggcaaaannnnnnnnagtgaaagagaaatgcataccgcttatgaaatcatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38096829 |
tagggatggatgaggtgaagttaaaggaaacaaaagaggaaaagagggaggcaaaaggggg---agtgaaagagaaatgcataccgcttatgaaatcatc |
38096925 |
T |
|
| Q |
117 |
caaagagagtaggaaatgatggtgatctggtctggtctggtc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38096926 |
caaagagagtaggaaatgatggtgatctggtatggtctggtc |
38096967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 38097020 - 38097152
Alignment:
| Q |
179 |
tctagtctaggtagaatatgtaatgagtacactagcaattataggttgatgcatgtaatattaatttctcttcaaatctcgatt-----tcatcttattt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
38097020 |
tctagtctaggtagaatatgtaatgagtacactagcaattataggttgatgcatgtaatattaatttcttttcaaatcccgatttcatctcatcttattt |
38097119 |
T |
|
| Q |
274 |
agtaaagtgcatttgtgaccttaatgcaagcct |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
38097120 |
agtaaagtgcatttctgaccttaatgcaagcct |
38097152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 470
Target Start/End: Complemental strand, 6783852 - 6783773
Alignment:
| Q |
391 |
caacaacttagaggttgtattcactaggcgacaaactaatgatagtactcctgctttggcacaaacttctttctcttatg |
470 |
Q |
| |
|
||||||||| | ||||| ||||| |||||| ||||||||||| | ||| || |||||||||||||||| ||||||||| |
|
|
| T |
6783852 |
caacaactttcaagttgttttcaccaggcgaaaaactaatgatggagctcatgttttggcacaaacttctatctcttatg |
6783773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University