View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_high_16 (Length: 268)
Name: NF19016_high_16
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 43663902 - 43663742
Alignment:
| Q |
92 |
gaaacatcacctcaatttgactctgtaggaacctgatgtatccaatggcttctaataatacagaagctgtgtcagtctgcaaaagtgaagcaccaaagac |
191 |
Q |
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| T |
43663902 |
gaaacatcacctcaatttgactctgtagaaacctgatgtatccaatggcttctaataatacagaagctgtgtcagtctgcaaaagtgaagcaccaaagac |
43663803 |
T |
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| Q |
192 |
tcatctttctttctttcttcttttaatgttaaaagtgaaatttcaatcaatgacaaaagat |
252 |
Q |
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| T |
43663802 |
tcatctttctttctttcttcttttaatgttaaaagtgaaatttcaatcaatgacaaaagat |
43663742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 43671888 - 43671797
Alignment:
| Q |
115 |
tgtaggaacctgatgtatccaatggcttctaataatacagaagctgtgtcagtctgcaaaagtgaagcaccaaagactcatctttctttctt |
206 |
Q |
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| T |
43671888 |
tgtagaaacctgatgtatcaaatggcttctaacaatacagaagctgtgtgattctgcataagtgaagcaccaaagactcatctttctttctt |
43671797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43663988 - 43663940
Alignment:
| Q |
1 |
aaaattgaactaactttaactgcatgtttgttctgaaataacttgctgc |
49 |
Q |
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| T |
43663988 |
aaaattgaactaactttaactgcatgtttgttctgaaataacttgctgc |
43663940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 33178115 - 33178198
Alignment:
| Q |
97 |
atcacctcaatttgactctgtaggaacctgatgtatccaatggcttctaataatacagaagctgtgtcagtctgcaaaagtgaa |
180 |
Q |
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| T |
33178115 |
atcacctcaatttgactctgaaggaatctgatgtaaccaatagcttctaacaagacagaggctgtgtcagtctgaaaaagtgaa |
33178198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 43426413 - 43426336
Alignment:
| Q |
100 |
acctcaatttgactctgtaggaacctgatgtatccaatggcttctaataatacagaagctgtgtcagtctgcaaaagt |
177 |
Q |
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| T |
43426413 |
acctcaatttgactctgaaggaatctgatataaccaatagattctaataagacagaggctgtgtcagtctgcaaaagt |
43426336 |
T |
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