View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_high_17 (Length: 250)
Name: NF19016_high_17
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 47333908 - 47334071
Alignment:
| Q |
71 |
attcttaaaagggattcctataaaatagtgttaagaattgcgacaaaaataaaatgaaacgtcccaccagacaagaggttggtctgcagtgaaagcagcc |
170 |
Q |
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| T |
47333908 |
attcttaaaagggattcctataaa-taatgtta-gaattgtgacaaaaataaaatgaaacgtcccaccagacaagaggttggtctgcagtgaaagcagcc |
47334005 |
T |
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| Q |
171 |
aacttttcatcannnnnnnatcacatcaattttttcattcgtcacaggtttagtatctattttcat |
236 |
Q |
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| T |
47334006 |
aacttttcatcatttttttatcacatcaattttttcattcgtcacaggtttagtatctattttcat |
47334071 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47333773 - 47333817
Alignment:
| Q |
1 |
ttaatttagtcacaaatttgtattcttctgtaattgagattagaa |
45 |
Q |
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| T |
47333773 |
ttaatttagtcacaaatttgtattcttctgtaattgagattagaa |
47333817 |
T |
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