View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19016_high_5 (Length: 507)
Name: NF19016_high_5
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 37419823 - 37419325
Alignment:
| Q |
1 |
acatgctgaaattaagatccatgcttcaaatattcagaaattccgttatgatggttatgtgtcagcagagaccattttactagatgcacacgttgcgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37419823 |
acatgctgaaattaagatccatgcttcaaatattcagaaattccgttatgatggttatgtgtcagcagagaccattttactagatgcacatgttgcgaag |
37419724 |
T |
|
| Q |
101 |
gctgatatttctctaataacttcaaaggtcaagagtgtgcaacaaatgggggtttttgttcgcaagcttttcagtattattaatgtggaatgtttacggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37419723 |
gctgatatttctctaataacttcaaaggtcaagagcgtgcaacaaatggggatttttgttcgcaagcttttcagtattattaatgtggaatgtttacggc |
37419624 |
T |
|
| Q |
201 |
tttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaataactaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37419623 |
tttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaataactaaat |
37419524 |
T |
|
| Q |
301 |
ttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgattaaaatactttagcatattatatgattatgaagttttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37419523 |
ttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgattaaaatactttagcatattatatgattatgaagttttga |
37419424 |
T |
|
| Q |
401 |
actttcactagtgaaaaattgtctaatggttcatttcatttactctatctcttggataatttcataatcgttgttctaacatgacaggctccctatgct |
499 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37419423 |
actttcactagtgataaattgtctaatggttcatttcatttactctatctcttggataatttcataatcgttgttctaacatgacaggctccctatgct |
37419325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 194 - 372
Target Start/End: Complemental strand, 37428084 - 37427906
Alignment:
| Q |
194 |
ttacggctttatctgtatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaata |
293 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428084 |
ttacggctttatctgcatcttaatccggtatgttttcttgcttcaacctttaagttaatgttgataagaagaaatttacattgttgtatcaaagtaaata |
37427985 |
T |
|
| Q |
294 |
actaaatttgtaattagtaagtaatatacaaggctcgggagactttttaataattgttctctggtgattaaaatacttt |
372 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
37427984 |
actaaatttgtaattagtaagtaaaatacaaggctagggaaactttttaataattgttctctggtggttaaaacacttt |
37427906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 37427902 - 37427826
Alignment:
| Q |
409 |
tagtgaaaaattgtctaatggttcatttcatttactctatctcttggataatttcataat-cgttgttctaacatga |
484 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37427902 |
tagtgaaaaattgtctaattgttcatttcatttactcaatctcttggataatttcttaatatgttgttctaacatga |
37427826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University