View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19016_high_6 (Length: 492)

Name: NF19016_high_6
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19016_high_6
NF19016_high_6
[»] chr2 (2 HSPs)
chr2 (13-478)||(2762047-2762512)
chr2 (59-116)||(3395410-3395467)
[»] chr8 (3 HSPs)
chr8 (59-116)||(23141753-23141810)
chr8 (59-116)||(42797243-42797300)
chr8 (48-92)||(38259275-38259319)
[»] chr3 (1 HSPs)
chr3 (59-116)||(50331916-50331973)
[»] chr6 (1 HSPs)
chr6 (64-116)||(1599754-1599806)
[»] scaffold0061 (1 HSPs)
scaffold0061 (54-124)||(45608-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (54-124)||(153109-153179)
[»] scaffold0380 (1 HSPs)
scaffold0380 (59-119)||(14573-14633)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-119)||(47113-47177)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Original strand, 2762047 - 2762512
Alignment:
Q  13 atcatcatattgaactatgactaaccagacaaataaattttaacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttata 112  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2762047 atcatcatattgaactatgactaaccagacaaataaattttcataccacatcttcaccaaaagctttaagacattagatacatgagtcagctcatttata 2762146  T
Q  113 tgttgtttaattttctacttttctatctaatacttataacttat-atcattaaactcaaccccgttgatatgtcatgatctatttaaaaggtgaaagaca 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2762147 tgttgtttaattttctacttttctatctaatacttataacttattatcattaaactcaaccc-gttgatatgtcatgatctatttaaaaggtgaaagaca 2762245  T
Q  212 tgaagttgatactatataaacctatttgcttgttttattcaatcttttatggatatacaacaaatttatatagtctcnnnnnnngtaatacctgtgtggt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||    
T  2762246 tgaagttgatactatataaacctatttgcttgttttattcaatcttttatggatatacaacaaatctatatagtctctttttttgtaatacctgtgtggt 2762345  T
Q  312 ctttttaagacaaaatattgtaagaattgcgcttgtacgagttaccattgtcttttttggtacattaccattgtcctctagctgtctagcatattagtaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2762346 ctttttaagacaaaatattgtaagaattgcgcttgtacgagttaccattgtcttttttggtacattaccattgtcctctagctgtctagcatattagtaa 2762445  T
Q  412 atgacacctcaaaatattgcaaatgagcaaccagtaaccactaaaatacattagatccaaattagtg 478  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2762446 atgacacctcaaaatattgcaaatgaccaaccagtaaccactaaaatacattagatccaaattagtg 2762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 3395410 - 3395467
Alignment:
Q  59 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 116  Q
    |||| ||||||| ||| | ||||||||||||||| |||||||| |||| |||||||||    
T  3395410 cacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtt 3395467  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 23141753 - 23141810
Alignment:
Q  59 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 116  Q
    |||| ||||||| ||| | |||||||||||||||||||||||| ||||||||||||||    
T  23141753 cacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtt 23141810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 42797243 - 42797300
Alignment:
Q  59 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 116  Q
    |||| ||||||| ||| | |||||||||||||||||||||||| |||| |||||||||    
T  42797243 cacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt 42797300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 38259275 - 38259319
Alignment:
Q  48 aattttaacaccacatcttcaccaaaagttttaagacattagata 92  Q
    |||||||||||||||| |||| || || |||||||||||||||||    
T  38259275 aattttaacaccacattttcatcagaaattttaagacattagata 38259319  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 50331916 - 50331973
Alignment:
Q  59 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 116  Q
    |||| ||||||| ||| | |||||||||||||||||||||||| |||| |||||||||    
T  50331916 cacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt 50331973  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 1599806 - 1599754
Alignment:
Q  64 cttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt 116  Q
    ||||||| ||| | |||||||||||||||||||||||| |||| |||||||||    
T  1599806 cttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt 1599754  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 45608 - 45678
Alignment:
Q  54 aacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtttaatt 124  Q
    ||||||| ||||||||| ||| | |||||||||||| || ||  |||| ||||||||||||||| ||||||    
T  45608 aacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 45678  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 153179 - 153109
Alignment:
Q  54 aacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtttaatt 124  Q
    ||||||| ||||||||| ||| | |||||||||||| || ||  |||| ||||||||||||||| ||||||    
T  153179 aacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 153109  T

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Target: scaffold0380 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 14633 - 14573
Alignment:
Q  59 cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtt 119  Q
    |||| ||||||| ||| | ||||||||||| |||  ||||||| |||||||||||||||||    
T  14633 cacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgtt 14573  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 47113 - 47177
Alignment:
Q  55 acaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtt 119  Q
    |||||||||||||||| ||||| ||||||||| || ||  || |||| |||| ||||||||||||    
T  47113 acaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatgttgtt 47177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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