View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_10 (Length: 402)
Name: NF19016_low_10
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 1515133 - 1515503
Alignment:
| Q |
18 |
aaatgttctttgaactttatgtgctcttcaatttatttgtggtttggatcgtgtaatgtcatggtgctttccgcaccttgtttcacgtgttgcccaagtt |
117 |
Q |
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| T |
1515133 |
aaatgttctttgaactttatgtgctcttcaatttatttgtggtttggatcgtgtaatgtcgtggtgctttccgcaccttgtttcacgtgttgcgcaagtt |
1515232 |
T |
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| Q |
118 |
ttatgttaggctattcatataagctatatagtttaagctactcatactcaaacccatgcaacttaccatcaaattaggccccctgccactgtatgagacc |
217 |
Q |
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| T |
1515233 |
ttacgttaggctattcatataagctatatagtttaagctactcatactcaaacccatgcaacttaccatcaaattaggccccctgccactgtatgagacc |
1515332 |
T |
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| Q |
218 |
gaccatagtgctttattgttgatttatcattaagttaaccactgccaccttgaattttgatcatgatcggaaccatttctaccttgccatgaagtcctca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1515333 |
gaccatagtgctttattgttgatttatcattaagttaaccactgccgccttggattttgatcatgatcggaaccatttctaccttgccatgaagtcctca |
1515432 |
T |
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| Q |
318 |
aaaaggttctctgagttttatgtggtcttcaaattattcctggtttgtggtgtgactcacgtaattctgtg |
388 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1515433 |
aaaaggttctctgagttttatgtggtcttcaacttattcctggtttgtggtgtgactcacgtaattctgtg |
1515503 |
T |
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