View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_11 (Length: 351)
Name: NF19016_low_11
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 53704979 - 53704661
Alignment:
| Q |
12 |
ataattctcaatgaaacccctcagattcgtctttttaatcccttaacatgtgtcactctttttcttcctcctattcacactttccctaatgtggtaagct |
111 |
Q |
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| T |
53704979 |
ataattctcaatgaaacccctcagattcgtctttttaatcccttaacatgtgtcactctttttcttcctcctattcacactttccctaacgtggtaagct |
53704880 |
T |
|
| Q |
112 |
ttgattattcaaatatcggtcgtgagtattcggttacaaacgatagttatttaagattttttagtttgagacaaatgtgtgatgatttcatagctaaaat |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53704879 |
ttgattattcaaatatcggccgtgagtattcggttacaaacgatagttatttaagattttttagtttgagacaaatgtgtgatgatttcatagctaaaat |
53704780 |
T |
|
| Q |
212 |
tgtattttcaacaagcccttcgcttagcgatgaattcgttgcacttgctattgttgatgtttatagttgtaataatctggctttctgtaaaaaaggttat |
311 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53704779 |
tgtattgtcaacaagcccttcgcttagcgatgaattcgttgcacttgctattgttgatggttatagttgtaataatctggctttctgtaaaaaaggttat |
53704680 |
T |
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| Q |
312 |
gattcttggattttcctaa |
330 |
Q |
| |
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||||||||||||||||||| |
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| T |
53704679 |
gattcttggattttcctaa |
53704661 |
T |
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