View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_12 (Length: 339)
Name: NF19016_low_12
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 46944159 - 46944456
Alignment:
| Q |
18 |
ccttcttcatttttacaacaatattttgtttgtttacataatattaattacatgtacattttatatacaaacgtgtttgtttatgtatatgtgtgtaaat |
117 |
Q |
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| T |
46944159 |
ccttcttcatttttaaaacaatattttg----tttacataatattaattacatgtacattttatatacaaacgtgtttgtttatgtatatgtgtgtaaat |
46944254 |
T |
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| Q |
118 |
ctttatacacacacataatagcaaaaagtcccttcttttcaaatttactgcaagttgttctggtgggggtctataannnnnnnnncttcttctttttata |
217 |
Q |
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| T |
46944255 |
ctttatacacacacataatagcaaaaagtcccttcttttgaaatttactacaagttgttttggtgggggtctataatttttt----tttttctttttata |
46944350 |
T |
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| Q |
218 |
agaaagcgtttgtttttagtatattgttaaatgtgagagaggaaatgttatcagtcctttaacgtcccaaccttttaaccattgtgctacattttcggat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46944351 |
agaaagcgtttgtttttagtatattgttaaatgtgagagaggaaatgttatcagtcctttaacgtcccaacattttaaccattgtgctacattttcggat |
46944450 |
T |
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