View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_13 (Length: 336)
Name: NF19016_low_13
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 35 - 323
Target Start/End: Complemental strand, 47072397 - 47072109
Alignment:
| Q |
35 |
cattcaaatgaactgtaaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttcatg |
134 |
Q |
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| T |
47072397 |
cattcaaatgaactgtaaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttcatg |
47072298 |
T |
|
| Q |
135 |
ttagttagcttttagtttacattatgttatttgattcagtttccagttcatcttcctttcttccaaaatgtatataattgatgtacccagtaccattaat |
234 |
Q |
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| T |
47072297 |
ttagttagcttttagtttacattatgttatttgattcagtttcaagttgatcttcctttcttccaaaatgtatataattgatgtacccagtaccattaat |
47072198 |
T |
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| Q |
235 |
tattgaaagtaagaatccaatgcttcatattcataatagggtatcagttacaaataattctacttctaccaccttcatctgttcatctc |
323 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47072197 |
tattgaaagtaagaatccattgcttcatattcataatagggtatcagttacaaataattctacttctaccaccttcatctgttcttctc |
47072109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 33598474 - 33598227
Alignment:
| Q |
35 |
cattcaaatgaactgtaaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttcatg |
134 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33598474 |
cattcaaatgaactgtagattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgccctttctatttcatg |
33598375 |
T |
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| Q |
135 |
ttagttagcttttagtttacattatgttatttgattcagtttccagttcatcttcctttcttccaaaatgtatataattgatgtacccagtaccattaat |
234 |
Q |
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| T |
33598374 |
ttaattaacttttagtttacattgtgttatttgattcagtttcaagttgatcttcctttcttccaaaatgtatataattgatgtacccagtaccattcat |
33598275 |
T |
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| Q |
235 |
tattgaaagtaagaatccaatgcttcatattcataatagggtatcagt |
282 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
33598274 |
tattgaaagtaagaaagcgttgcttcatattcataatagggtatcagt |
33598227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 176
Target Start/End: Original strand, 18232771 - 18232908
Alignment:
| Q |
35 |
cattcaaatgaactgt--aaattgaagcatgaatctctgccatatgtagcatcttgattatgaaagttagatagtagtagtttatgctctttctatttca |
132 |
Q |
| |
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|||||||||||||||| |||| ||| ||||||||||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
18232771 |
cattcaaatgaactgtgtaaatagaaacatgaatctctgctatat------tcttgattataaatgttagatagtagtagtttatgctatttctatttca |
18232864 |
T |
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| Q |
133 |
tgttagttagcttttagtttacattatgttatttgattcagttt |
176 |
Q |
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|||| |||||||| ||||||||||| ||||| |||||||||||| |
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| T |
18232865 |
tgtttgttagcttctagtttacattgtgttacttgattcagttt |
18232908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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