View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19016_low_2 (Length: 706)
Name: NF19016_low_2
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_2 |
 | |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 623; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 10 - 688
Target Start/End: Original strand, 745927 - 746605
Alignment:
| Q |
10 |
aagaatattttaaggagaggatgaaaaaagttgaatcggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctta |
109 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
745927 |
aagaatattttaaggaaaggatgaaaaaagttgaattggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctta |
746026 |
T |
|
| Q |
110 |
caattcttttggatatgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgcgaaaagatgaatca |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
746027 |
caattcttttggaaatgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgcgaaaagatgaatca |
746126 |
T |
|
| Q |
210 |
tacaaggtcaataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagagaaaatttact |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
746127 |
tacaaggtcaataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagttaaaatttact |
746226 |
T |
|
| Q |
310 |
ctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttcaagtgcacaaag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
746227 |
ctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttccagtgcacaaag |
746326 |
T |
|
| Q |
410 |
ctcctactattgccctagcaagcatattgatgctaatgttacccatgattcaaaaatcggtatgaagaagaaggatgaagttaaaaatgataaaaacttg |
509 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
746327 |
ctcctactattaccctagcaagcatattgatgctaatgttacctatgattcaaaaatcagtatgaagaagaaggatgaagttaaaaatgacaaaaacttg |
746426 |
T |
|
| Q |
510 |
ccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatattgcaaacctatctcatgaat |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
746427 |
ccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatcttgcaaacctatcccatgaat |
746526 |
T |
|
| Q |
610 |
atctactttatggatcatatgatatagataatattcaagctcaactgttcaactccaagaatggaacgaagtagcatgt |
688 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746527 |
atctactttatggatcctatgatatagatagtattcaagctcaactgttcaactccaagaatggaacgaagtagcatgt |
746605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 751830 - 752015
Alignment:
| Q |
10 |
aagaatattttaaggagaggatgaaaaaagttgaatcggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctta |
109 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||| ||||||||||||||| | |
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| T |
751830 |
aagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcatt |
751929 |
T |
|
| Q |
110 |
caattcttttggatatgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgc |
195 |
Q |
| |
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||||| | ||| | |||||||||| |||| ||||| ||| | ||||||| ||||||||| ||||| ||| |||||||||||||| |
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| T |
751930 |
caattttcttgaagatgaacaattaaggttatttgctagcatcttggattttaagcttgatgcatgcaatctaaagatgaatatgc |
752015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 476 - 683
Target Start/End: Original strand, 752392 - 752599
Alignment:
| Q |
476 |
gaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcct |
575 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| | |
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| T |
752392 |
gaagaaggatgaagctgaaaatgataaaattctgccaccatattattacaatagaaatggaatgataatgcaatcatatcctattgctatgtctactctt |
752491 |
T |
|
| Q |
576 |
ccttttcagaatattgcaaacctatctcatgaatatctactttatggatcatatgatatagataatattcaagctcaactgttcaactccaagaatggaa |
675 |
Q |
| |
|
|||| ||| ||| || |||||||||| |||||| ||||| | ||||||| ||||||| |||| | |||| ||||| ||||||||| || | |||||| |
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|
| T |
752492 |
ccttctcaaaatctttcaaacctatcccatgaacatctaaataatggatcctatgataaagatgttcttcacactcaaatgttcaactacatggatggaa |
752591 |
T |
|
| Q |
676 |
cgaagtag |
683 |
Q |
| |
|
||||||| |
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|
| T |
752592 |
ggaagtag |
752599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 7327603 - 7327412
Alignment:
| Q |
10 |
aagaatattttaaggagaggatgaaaaaagttgaatcggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctta |
109 |
Q |
| |
|
|||| ||||||||||| |||||||||||| || ||| ||||||| ||||||||| ||||||| | ||||||||| ||||||| | |||||||||||||| |
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|
| T |
7327603 |
aagagtattttaaggaaaggatgaaaaaaattaaatttgagatttccaaagtgcgcaaagagaagataaagatgatgtatccatcctgggatgaatctta |
7327504 |
T |
|
| Q |
110 |
caattcttttggatatgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgcgaaaag |
201 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||| ||| | |||||||| |||||||| || ||| |||||| |||| |||||| ||||| |
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| T |
7327503 |
caattcacttggagtggaacaagtgaggtcatttgctagcatgttggattccaagcttgatgcttgtaatcaaaggatgcatatgctaaaag |
7327412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 220 - 412
Target Start/End: Original strand, 752067 - 752259
Alignment:
| Q |
220 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagagaaaatttactctccattgat |
319 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| || ||| | ||||||||||| ||| | |||||| ||||||| | ||||| | |||||||| |
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|
| T |
752067 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcccgcaaaacaacatgtctcaagcacacatttatccaccattgat |
752166 |
T |
|
| Q |
320 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttcaagtgcacaaagctc |
412 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||| || || |||||||||||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
752167 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
752259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 462 - 683
Target Start/End: Complemental strand, 7327058 - 7326837
Alignment:
| Q |
462 |
aaaatcggtatgaagaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattg |
561 |
Q |
| |
|
||||||| |||||| | |||||||| || | |||||||| ||||||| || ||||||||||||||||||||||| || ||||||||||||||| ||| |
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| T |
7327058 |
aaaatcgatatgaaaaggaaggatgtagctgaaaatgatgaaaacttatcaccatactattacaatggaaatgcatcgacgatgcaatcatatccttttg |
7326959 |
T |
|
| Q |
562 |
ctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctactttatggatcatatgatatagataatattcaagctcaactgttcaa |
661 |
Q |
| |
|
|||||| | ||| |||||| |||||| || || ||||| | |||| || || |||| |||||| |||||||| ||| |||||||||| |||||| |
|
|
| T |
7326958 |
ctatgcattctcttcctttccagaatctttcatacctaccacatggatttcaacttaatggattcaatgatataaatatgcttcaagctcataagttcaa |
7326859 |
T |
|
| Q |
662 |
ctccaagaatggaacgaagtag |
683 |
Q |
| |
|
|| || | |||||| ||||||| |
|
|
| T |
7326858 |
ctacatggatggaaggaagtag |
7326837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 7327321 - 7327168
Alignment:
| Q |
265 |
acttcaatctcatgcataccaacatatctcaagagaaaatttactctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgatt |
364 |
Q |
| |
|
|||||||||||||||| | |||||| | | ||| |||||| | ||||||||||||||||| |||||||| || ||||||||||||| | ||| | | |
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|
| T |
7327321 |
acttcaatctcatgcaaaacaacatgtttgaagcaaaaattcatcctccattgatgaatattaatgataaaaccccattagggttttggcaacttcaact |
7327222 |
T |
|
| Q |
365 |
gggacaaagctctcaacattctcttatggtttcaagtgcacaaagctcctacta |
418 |
Q |
| |
|
|||||||||||||||| |||| |||| |||| | ||| |||||||| ||||| |
|
|
| T |
7327221 |
cggacaaagctctcaaccttcttctatgatttccaatgcgcaaagctcatacta |
7327168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 752251 - 752299
Alignment:
| Q |
368 |
acaaagctctcaacattctcttatggtttcaagtgcacaaagctcctac |
416 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
752251 |
acaaagctctcaaccttctcctatggtttctagtgcacaaagcttctac |
752299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 202 - 386
Target Start/End: Complemental strand, 51792474 - 51792290
Alignment:
| Q |
202 |
atgaatcatacaaggtcaataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagagaa |
301 |
Q |
| |
|
|||||||| ||||||| |||| ||||| ||| |||||| ||||||| ||||| || || | |||||||||||||||| | ||| ||||||| | |
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|
| T |
51792474 |
atgaatcacacaaggtagataaacttatcagtactccttccttgaccccaaatccaagttactacttcaatctcatgcaaaattccatgtctcaagcaca |
51792375 |
T |
|
| Q |
302 |
aatttactctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattct |
386 |
Q |
| |
|
|| ||| ||||| ||||||||||| |||||||||| |||||||||||||||||| ||| || ||||||||||||||||| |||| |
|
|
| T |
51792374 |
aacttatcctccaatgatgaatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctcaaccttct |
51792290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 51792693 - 51792568
Alignment:
| Q |
10 |
aagaatattttaaggagaggatgaaaaaagttgaatcggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctta |
109 |
Q |
| |
|
|||| ||||||||||| || || | |||| |||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
51792693 |
aagagtattttaaggaaagaattagaaaacttgaattcgagattaccaaagtgcgtaaagagaagttaaagatgatgtatccaacttggaatgaatcttt |
51792594 |
T |
|
| Q |
110 |
caattcttttggatatgaacaattga |
135 |
Q |
| |
|
||||||| ||||| |||||||||| |
|
|
| T |
51792593 |
caattctcttggagcggaacaattga |
51792568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 51792081 - 51791977
Alignment:
| Q |
520 |
attacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctacttta |
619 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||| | |||||||| | |||| || || |||| | |
|
|
| T |
51792081 |
attacaatggaaatgcaatgacaatgcaatcatatcctattactatgcacactcttccttttcagaatctctcaaacctaccacatggatttcaacttaa |
51791982 |
T |
|
| Q |
620 |
tggat |
624 |
Q |
| |
|
||||| |
|
|
| T |
51791981 |
tggat |
51791977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 572
Target Start/End: Complemental strand, 38292 - 38237
Alignment:
| Q |
517 |
actattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctact |
572 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| || |||| |||| |
|
|
| T |
38292 |
actattataatggaaatgcaatgccaatgcaatcatatcctatcgcaatgcatact |
38237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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