View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19016_low_20 (Length: 238)
Name: NF19016_low_20
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_20 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 37420057 - 37419837
Alignment:
| Q |
18 |
tgtttgtctttcatccctcactgtcttgcatttcattgcaatcaggactggaatgacaattacttgttactcttctaacgagtcaaaagagttaacactt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
37420057 |
tgtttgtctttcatccctcacagtcttgcatttgattgcaatcaggactggaatgacaattacttgttactcttctaatgagtcaaaagagttacgactt |
37419958 |
T |
|
| Q |
118 |
aatttcccagttcttagagagtatgtgacaaatgcttgcacttggtcaggtgtaaagtgtgtcactttagaagcgcctctacttgaagtggttactatga |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37419957 |
aatttcccaattcttagagagtatgtgacaaatgcttgcacttggtcaggtgtaaagtgtgtcactttagaagcgcctctacttgaagtggttactatga |
37419858 |
T |
|
| Q |
218 |
tccgtggtaatcgttattcgc |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37419857 |
cccgtggtaatcgttattcgc |
37419837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 51944309 - 51944164
Alignment:
| Q |
66 |
tggaatgacaattacttgttactcttctaacgagtcaaaagagttaacacttaatttcccagttctt-agagagtatgtgacaaatgcttgcacttggtc |
164 |
Q |
| |
|
|||||| ||| |||||||||| |||||||| || |||||||||||||| |||||||||||| ||||| ||||||||| || | |||||||||| | |
|
|
| T |
51944309 |
tggaatcacatttacttgttagtcttctaatgaatcaaaagagttaactcttaatttcccaattcttaagagagtattacgcagccgattgcacttggac |
51944210 |
T |
|
| Q |
165 |
aggtgtaaagtgtgtcactttagaagcgcctctacttgaagtggtt |
210 |
Q |
| |
|
||||||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
51944209 |
tggtgtaaagagtgtcactttggaagcgcctttacttgaagtggtt |
51944164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 34747077 - 34746958
Alignment:
| Q |
87 |
ctcttctaacgagtcaaaagagttaacacttaatttcccagttcttagagagtatgtgacaaatgcttgcacttggtcaggtgtaaagtgtgtcacttta |
186 |
Q |
| |
|
||||||||| || || ||| ||| |||||||||||||||||||||||| ||| ||||||| || ||||| || ||||||||| ||| |||||| |||| |
|
|
| T |
34747077 |
ctcttctaatgactccaaaacgttgacacttaatttcccagttcttagaaagtttgtgacatttggttgcattttgtcaggtgtgaagagtgtcatttta |
34746978 |
T |
|
| Q |
187 |
gaagcgcctctacttgaagt |
206 |
Q |
| |
|
||| ||||| |||||||| |
|
|
| T |
34746977 |
caagtacctctgcttgaagt |
34746958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 34742529 - 34742387
Alignment:
| Q |
68 |
gaatgacaattacttgttactcttctaacgagtcaaaagagttaacacttaatttcccagttcttagagagtatgtgacaaatgcttgcacttggtcagg |
167 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||| ||| || ||||||||||||||| ||||| |||||| |||| | ||||||||||||||| |
|
|
| T |
34742529 |
gaatcacaattacttgtgactcttctaataagtccaaaactttggcacttaatttcccagcaattagaaagtatgagacattggattgcacttggtcagg |
34742430 |
T |
|
| Q |
168 |
tgtaaagtgtgtcactttagaagcgcctctacttgaagtggtt |
210 |
Q |
| |
|
||| || |||| |||||| || |||||||||| |||||||| |
|
|
| T |
34742429 |
tgtgaatagtgttactttaagagtgcctctactttaagtggtt |
34742387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 34751706 - 34751627
Alignment:
| Q |
68 |
gaatgacaattacttgttactcttctaacgagtcaaaagagttaacacttaatttcccagttcttagagagtatgtgaca |
147 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| ||| ||| | ||||||||||||| ||||||| |||||| |||| |
|
|
| T |
34751706 |
gaatcacaattacttgtgactcttctaatgagtccaaaacgttggcgcttaatttcccagctcttagaaagtatgagaca |
34751627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University