View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_21 (Length: 238)
Name: NF19016_low_21
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 1514802 - 1514583
Alignment:
| Q |
3 |
tatatatcctaagcattattaggaaaatttgtaaagaacatcgtagacgattgatcagtaatgacattggattcataaaggtcagaaaattaacctaagc |
102 |
Q |
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| T |
1514802 |
tatatatcctaagcaatattaggaaaatttgtaaagaacatcgtagacgattgatcagtaatgacattggattcataaaggtcagaaaattaacctaagc |
1514703 |
T |
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| Q |
103 |
aaaccagagtagttatttcaatcatatatcactgaaaataatagttagttcaaattccactacgctacaatgctaaagtgctgctatttgacaacacttt |
202 |
Q |
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| T |
1514702 |
aaaccagagtagttatttcaatcatatatcactgaaaataatagttagttcaaattccacaacgctacaatgctaaagtgctgctatttgacaacacttt |
1514603 |
T |
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| Q |
203 |
atactaaagtatcacacaat |
222 |
Q |
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| T |
1514602 |
acactaaagtatcacacaat |
1514583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 3335209 - 3335181
Alignment:
| Q |
182 |
gctgctatttgacaacactttatactaaa |
210 |
Q |
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| T |
3335209 |
gctgctatttgacaacactttatactaaa |
3335181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 44458211 - 44458253
Alignment:
| Q |
168 |
tacaatgctaaagtgctgctatttgacaacactttatactaaa |
210 |
Q |
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| T |
44458211 |
tacaatgctatagtgctgctatttgacaatactttgtactaaa |
44458253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 26466137 - 26466072
Alignment:
| Q |
136 |
gaaaataatagttagttcaaattccactacgctacaatgctaaagtgctgctatttgacaacactt |
201 |
Q |
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| T |
26466137 |
gaaaataacggtttgttcaaattccactatgctacaatgatatagcgcaggtatttgacaacactt |
26466072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 8130819 - 8130874
Alignment:
| Q |
151 |
ttcaaattccactacgctacaatgctaaagtgctgctatttgacaacactttatact |
207 |
Q |
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|||||||||| |||||||||| ||||| ||||||||||||| |||||| ||| |||| |
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| T |
8130819 |
ttcaaattccgctacgctaca-tgctatagtgctgctatttaacaacaatttgtact |
8130874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 50402650 - 50402678
Alignment:
| Q |
182 |
gctgctatttgacaacactttatactaaa |
210 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50402650 |
gctgctatttgacaacactttatactaaa |
50402678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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