View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_24 (Length: 219)
Name: NF19016_low_24
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_24 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 20002892 - 20003102
Alignment:
| Q |
9 |
gaagaatatccaagtgtttctttcacatggctagatgcattgaagctgtcaccatttcaacaatcacgatgccattgttgcacttggacaactatctgta |
108 |
Q |
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| T |
20002892 |
gaagaatatccaagtgtttctttcacatggctagatgcgttgaagctgtcaccatttcaacaatcacgatgccattgttgaacttggacaactatctgta |
20002991 |
T |
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| Q |
109 |
gcgcaagccaagatgtctctataatcccgtgatattttgaacgagtcgtaaaccttcccatctctgctcttcttatattcaaacaacaaatttgaatgat |
208 |
Q |
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| T |
20002992 |
gcgcaagccaagatgtctctataatcccgtgatattttgaacgagtcgtaaaccttcccatctctgctcttcttatattcaaacaacaaatttgaatgat |
20003091 |
T |
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| Q |
209 |
caaatgcagtt |
219 |
Q |
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| T |
20003092 |
caaatgcagtt |
20003102 |
T |
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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 20001920 - 20001990
Alignment:
| Q |
109 |
gcgcaagccaagatgtctctataatcccgtgatattttgaacgagtcgtaaaccttcccatctctgctctt |
179 |
Q |
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| T |
20001920 |
gcgcaagtcaagacgtctctataatcccgtgacattttgaacgagtcataaaccttcccatctctgctctt |
20001990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 26412597 - 26412453
Alignment:
| Q |
71 |
atcacgatgccattgttgcacttggacaactatctgtagcgcaagccaagatgtctctataatcccgtgatattttgaacgagtcgtaaaccttcccatc |
170 |
Q |
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| T |
26412597 |
atcaagatgctaatgttgtactttgacaactatcaacagtgcaagccaagatgtccctataatcccttgatatcttaaaagagtcgtaaacttgtccatc |
26412498 |
T |
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| Q |
171 |
tctgctcttcttatattcaaacaacaaatttgaatgatcaaatgc |
215 |
Q |
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| T |
26412497 |
actactcttcttgtactctaacaacaagtttgaatggtcaaatgc |
26412453 |
T |
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