View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19016_low_3 (Length: 630)
Name: NF19016_low_3
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 261 - 613
Target Start/End: Original strand, 11300197 - 11300544
Alignment:
| Q |
261 |
tgttattacattgaactaagtcatttttaaattattatatgtgtcaatgtttcgtttctatgttgtatctggtgtcatggttttgtaagtcttaatgaat |
360 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
11300197 |
tgttattacaatgaactaagtcattttaaaattattatccgtgtcaatgtttcgtttctatgtcgtatccggtgtcatggttttgtaagtcttactgaat |
11300296 |
T |
|
| Q |
361 |
atcattaatattgtcgaaaagaatagtctcttcggcagaaatcaaaaccagataatattaagtattagtaactcgtgttttttgtgaaaacaatttcgta |
460 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
11300297 |
atcattaatattgtcgaaaagaatcgtctcttcggcagaaatcaaaaccagataatattaagtattagtaacttgtgtttttggtgaaaacaatttcgta |
11300396 |
T |
|
| Q |
461 |
accaaaaggtttgaaacatggaaacggacacatggtttgttagaaaatcatgcatgtttttcatgtaagttttcgtatcatatagttgatgtaacaaaat |
560 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11300397 |
acaaaaaggtttgaaacatggacacggacacatggtttgttagaaaatcatgcatgtttttcatgtaagttttcgtatcatatagttgatgt-----aat |
11300491 |
T |
|
| Q |
561 |
aacatttctcatatctaagtcaatgcatgcatgttgttctgaacgaaaacgat |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11300492 |
aacatttctcatatctaagtcaatgcatgcatgttgttgtgaacgaaaacgat |
11300544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 11299893 - 11300144
Alignment:
| Q |
13 |
aatattttcacatgtaagatattacaaaaatgtttcatgtacatccaattttccctacacccacgcaagtacgttgtttaatcacatagaaaattatggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11299893 |
aatattttcacatgtaagatattacaaaaatgtttcatgtacatccaattttccctacacctacgcaagtacgttgtttaatcacattgaaaattgtggt |
11299992 |
T |
|
| Q |
113 |
taatatgtaattgaattaatcacaattttgaccgtgaatttaattaaaatatctatccaactaaatt-aaaacatatttgaatgtgacgccggtgtagnn |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11299993 |
taatatgtaattgaattaatcacaattttgaccgtgaatttaattaaaacatctatccaactaaattaaaaacatatttgaatgtgacgccggtgtagga |
11300092 |
T |
|
| Q |
212 |
nnnnntatgagcctgaatacactatagccccaattcttcttatcgaatgtgt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11300093 |
aaaaatatgagcctgaatacactatagccccaattcttcaaatcgaatgtgt |
11300144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 19297003 - 19297081
Alignment:
| Q |
103 |
aaattatggttaat-atgtaattgaattaatcacaattttgaccgtgaatttaattaaaatatctatccaactaaattaa |
181 |
Q |
| |
|
||||| |||||||| ||||| ||||||||| || ||||||||||||||||| |||| || |||||| |||||||||||| |
|
|
| T |
19297003 |
aaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattgaatt-aaccatctattcaactaaattaa |
19297081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 3750634 - 3750691
Alignment:
| Q |
103 |
aaattatggttaata-tgtaattgaattaatcacaattttgaccgtgaatttaattaa |
159 |
Q |
| |
|
||||| ||||||||| |||||||||||||| ||||| ||||||| |||||| |||||| |
|
|
| T |
3750634 |
aaattgtggttaataatgtaattgaattaaccacaactttgaccttgaattgaattaa |
3750691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 31120298 - 31120354
Alignment:
| Q |
103 |
aaattatggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaa |
159 |
Q |
| |
|
||||| || ||||||| |||||||||| ||||||||||| || ||||||| |||||| |
|
|
| T |
31120298 |
aaattgtgattaatatataattgaatttatcacaattttaacagtgaattgaattaa |
31120354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University