View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19016_low_4 (Length: 618)
Name: NF19016_low_4
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_4 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 18701127 - 18701542
Alignment:
| Q |
13 |
agattatacttgatcatagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18701127 |
agattatacttgatcatagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtg |
18701226 |
T |
|
| Q |
113 |
gccaaggacgacaaaccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctg |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
18701227 |
gccaaggacgacaaaccatccccttttctcatttctcttcctcacaagagaaagaccaacgttctaacaccgactctatgtggctttcatagtcctgctg |
18701326 |
T |
|
| Q |
213 |
cctatatcaaatatcacaatcttagtttttccattacagaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttg |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18701327 |
cctatatcaaatatcacaatcttagattttccattacaaaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactcta |
18701426 |
T |
|
| Q |
313 |
tttcaggccattccttaagaaactataatccctctggtatctatatattgctctcagttattgtgtttctgaaatattatttagaacaaaataagcagat |
412 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701427 |
tttcaggccattccttaagaaacaatattccctctggtatctatatatcgctctgagttattgtgtttctgaaatattatttagaacaaaataagcagat |
18701526 |
T |
|
| Q |
413 |
taaaacaaaaacacaa |
428 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18701527 |
taaaacaaaaacacaa |
18701542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 449 - 602
Target Start/End: Original strand, 18701578 - 18701731
Alignment:
| Q |
449 |
aattaaattcttgtagcatacatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaattttcactcttt |
548 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18701578 |
aattgaattcttgtagcatacatttaaaactattaggaaacctctctgtgtatcttagctaatggcagttactccacattgacaccaattttcactcttt |
18701677 |
T |
|
| Q |
549 |
aaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaag |
602 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701678 |
aaggttgtttctccaacgtaaattaatgtaacagttgtaatgtaaaattgaaag |
18701731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 40801905 - 40801555
Alignment:
| Q |
13 |
agattatacttgatcatagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
40801905 |
agattatacttgatcatagtatgaaatagaaaatcattttgaacacttttttcttgattaatggtagaaccttgatgcacattgatacttttcgccgatg |
40801806 |
T |
|
| Q |
113 |
gccaaggacgacaaaccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctg |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801805 |
gccaatgacgacaaaccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctg |
40801706 |
T |
|
| Q |
213 |
cctatatcaaatatcacaatcttagtttttccattacagaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40801705 |
cctatatcaaatatcacaatcttagtttttccattacaaaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactctg |
40801606 |
T |
|
| Q |
313 |
tttcaggccattccttaagaaactataatccctctggtatctatatattgc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801605 |
tttcaggccattccttaagaaactataatccctctggtatctatatattgc |
40801555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 439 - 602
Target Start/End: Complemental strand, 40801409 - 40801246
Alignment:
| Q |
439 |
cccttgttacaattaaattcttgtagcatacatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaatt |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
40801409 |
cccttgttacaattaaattcttgtagcatacatttaaaactattaagaaacctctctgtgtatcttagttgatggcagttactccacattgacaccaatt |
40801310 |
T |
|
| Q |
539 |
ttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaag |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801309 |
ttcactctttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaag |
40801246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 481
Target Start/End: Complemental strand, 40801480 - 40801438
Alignment:
| Q |
439 |
cccttgttacaattaaattcttgtagcatacatttaaaactat |
481 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40801480 |
cccttgttacaattaaattcttgtagtatacatttaaaactat |
40801438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 481
Target Start/End: Complemental strand, 40801551 - 40801509
Alignment:
| Q |
439 |
cccttgttacaattaaattcttgtagcatacatttaaaactat |
481 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40801551 |
cccttgttacaattaaattcttgtagtatacatttaaaactat |
40801509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 23126237 - 23126087
Alignment:
| Q |
13 |
agattatacttgatcatagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtg |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23126237 |
agattatacttgatcataatatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtg |
23126138 |
T |
|
| Q |
113 |
gccaaggacgacaaaccttccccttttctcatttctcttcctcaaaggaga |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23126137 |
gccaaggacgacaaaccttccccttttctcatttctcttcctcaaaggaga |
23126087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 596
Target Start/End: Complemental strand, 17882796 - 17882660
Alignment:
| Q |
459 |
ttgtagcatacatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaattttcactctttaaggttgttt |
558 |
Q |
| |
|
|||||||||||||| ||| | || | ||||||||||||| |||||| |||| |||| ||| || || ||||||||| | |||||||||||||||| |
|
|
| T |
17882796 |
ttgtagcatacattgaaagcgatgaggaaacctctctgtctatcttggctgatagcagcccctctgcattgccaccaatttcccctctttaaggttgttt |
17882697 |
T |
|
| Q |
559 |
ctccaacctaaattaatgtaacagttgtaatgtaaaat |
596 |
Q |
| |
|
|||| || |||| ||||||||||||||||| ||||||| |
|
|
| T |
17882696 |
ctcc-acgtaaaataatgtaacagttgtaaggtaaaat |
17882660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 347
Target Start/End: Original strand, 5461023 - 5461196
Alignment:
| Q |
174 |
ttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatcacaatcttagtttttccattacagaaacattgttgtgatgctccgt |
273 |
Q |
| |
|
|||||||||| ||| | || ||||| ||||| ||| ||| | || || ||||| |||||| ||||||||||||||| |||| |||||| | ||||||| |
|
|
| T |
5461023 |
ttccaacaccgactatgtgctgcttttatagtactgttgcatgtaccatatatcccaatctcagtttttccattacaaaaacgttgttgcaaagctccgt |
5461122 |
T |
|
| Q |
274 |
tgatattatgtatttcttcatatttttgttattactttgtttcaggccattccttaagaaactataatccctct |
347 |
Q |
| |
|
|||| | |||||||| ||||||| | || ||||||||| || ||||||| ||||||| ||||||||||| |
|
|
| T |
5461123 |
cgataatccaaatttcttcctatttttttgatctctttgtttcgggacattcctcaagaaaccataatccctct |
5461196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 603
Target Start/End: Original strand, 5461361 - 5461408
Alignment:
| Q |
556 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaagt |
603 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||| |||||| |
|
|
| T |
5461361 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagt |
5461408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 29633992 - 29633943
Alignment:
| Q |
24 |
gatcatagtatgaaatagaaaatcattttgaacactttcttcttgattaa |
73 |
Q |
| |
|
|||| ||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
29633992 |
gatcgtagtaggaaatagaaaatgcttttgagcactttcttcttgattaa |
29633943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 40389927 - 40389878
Alignment:
| Q |
24 |
gatcatagtatgaaatagaaaatcattttgaacactttcttcttgattaa |
73 |
Q |
| |
|
|||| ||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
40389927 |
gatcgtagtaggaaatagaaaatgcttttgagcactttcttcttgattaa |
40389878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 282 - 603
Target Start/End: Original strand, 24866526 - 24866861
Alignment:
| Q |
282 |
tgtatttcttcatatttttgttattactttgtttcaggccattccttaagaaactataatccctctggtatctatatattgctctcagttattgtgtttc |
381 |
Q |
| |
|
|||||||| |||||| |||||||| || |||| | ||||||||| || |||| ||||||||||| |||||| |||||||| | ||||||||||||| |
|
|
| T |
24866526 |
tgtatttcatcatatatttgttatctctatgttcccagccattcctcaaaaaaccataatccctctcatatctacatattgctataagttattgtgtttt |
24866625 |
T |
|
| Q |
382 |
tgaaatattatttagaacaaaataagcagat----taaaacaaaaacacaatg----------nnnnnnnncccttgttacaattaaattcttgtagcat |
467 |
Q |
| |
|
|||||||||| |||||| |||||||| |||| ||||| |||||||||||| || ||| ||||||| ||||||||||| || |
|
|
| T |
24866626 |
tgaaatattagttagaataaaataagaagattaaataaaaaaaaaacacaatgtcaaaaatgaagaaaaaaccattggtacaattcaattcttgtagtat |
24866725 |
T |
|
| Q |
468 |
acatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaattttcactctttaaggttgtttctccaacct |
567 |
Q |
| |
|
|||| ||||| || | ||||||||| ||| | |||| ||||||||| ||| || |||||||||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
24866726 |
acatcgaaaacaatgaggaaacctctatgtctttcttggccgatggcagtccctctgcattgacaccaatttctactctttcaggctgtatctccaacct |
24866825 |
T |
|
| Q |
568 |
aaattaatgtaacagttgtaatgtaaaattgaaagt |
603 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
24866826 |
aaaataatgtaacagttgtaaggtaaaatagaaagt |
24866861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 24864512 - 24864555
Alignment:
| Q |
25 |
atcatagtatgaaatagaaaatcattttgaacactttcttcttg |
68 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
24864512 |
atcatagtaagaaatagaaaatccttttgagcactttcttcttg |
24864555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 24864640 - 24864685
Alignment:
| Q |
71 |
taatggtagaaccttgatgcacattgatacttttcgtcggtggccaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
24864640 |
taatggtagaaccttgatgcaaattgttac-tttcgtcggtggccaa |
24864685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 449 - 603
Target Start/End: Original strand, 2248663 - 2248815
Alignment:
| Q |
449 |
aattaaattcttgtagcatacatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaattttcactcttt |
548 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| || | |||| ||||||| |||||| |||||||| | ||| || |||| ||||||| ||| |||| |
|
|
| T |
2248663 |
aattcaattcttgtatcatacattgaaaacaatgaggaaa--tctctgtctatcttggccgatggcagctcctcttcattgactccaatttccacacttt |
2248760 |
T |
|
| Q |
549 |
aaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaagt |
603 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
2248761 |
aaggttgtttctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaagt |
2248815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 252 - 416
Target Start/End: Original strand, 50379400 - 50379564
Alignment:
| Q |
252 |
aaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattccttaagaaactataatccctctggta |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||||||| | |||||||| |||||||| |||| || |||| ||||| | |
|
|
| T |
50379400 |
aaacattgttgcgatgctccgttgatattcccgatttcttcctatttttgttatctcactgtttcagaccattcctcaagataccctaatacctctcatg |
50379499 |
T |
|
| Q |
352 |
tctatatattgctctcagttattgtgtttctgaaatattatttagaacaaaataagcagattaaa |
416 |
Q |
| |
|
| |||||| ||||||| ||| | ||||| |||||||||| |||||| |||||||| |||||||| |
|
|
| T |
50379500 |
tttatataccgctctcaattactttgtttttgaaatattagttagaataaaataagaagattaaa |
50379564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 83698 - 83654
Alignment:
| Q |
29 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaa |
73 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
83698 |
tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa |
83654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 6508037 - 6508122
Alignment:
| Q |
128 |
ccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcct |
215 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||| |||||||||| || | ||||| |||||||| |||| ||| ||| ||||||||| |
|
|
| T |
6508037 |
ccttccccttttttcatttctctatctcgaaggcgaaagaccaa--tttccacaccgactctatgcggctgtcacagtactgctgcct |
6508122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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