View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19016_low_6 (Length: 492)
Name: NF19016_low_6
Description: NF19016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19016_low_6 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0380 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Original strand, 2762047 - 2762512
Alignment:
| Q |
13 |
atcatcatattgaactatgactaaccagacaaataaattttaacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttata |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2762047 |
atcatcatattgaactatgactaaccagacaaataaattttcataccacatcttcaccaaaagctttaagacattagatacatgagtcagctcatttata |
2762146 |
T |
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| Q |
113 |
tgttgtttaattttctacttttctatctaatacttataacttat-atcattaaactcaaccccgttgatatgtcatgatctatttaaaaggtgaaagaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2762147 |
tgttgtttaattttctacttttctatctaatacttataacttattatcattaaactcaaccc-gttgatatgtcatgatctatttaaaaggtgaaagaca |
2762245 |
T |
|
| Q |
212 |
tgaagttgatactatataaacctatttgcttgttttattcaatcttttatggatatacaacaaatttatatagtctcnnnnnnngtaatacctgtgtggt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
2762246 |
tgaagttgatactatataaacctatttgcttgttttattcaatcttttatggatatacaacaaatctatatagtctctttttttgtaatacctgtgtggt |
2762345 |
T |
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| Q |
312 |
ctttttaagacaaaatattgtaagaattgcgcttgtacgagttaccattgtcttttttggtacattaccattgtcctctagctgtctagcatattagtaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2762346 |
ctttttaagacaaaatattgtaagaattgcgcttgtacgagttaccattgtcttttttggtacattaccattgtcctctagctgtctagcatattagtaa |
2762445 |
T |
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| Q |
412 |
atgacacctcaaaatattgcaaatgagcaaccagtaaccactaaaatacattagatccaaattagtg |
478 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2762446 |
atgacacctcaaaatattgcaaatgaccaaccagtaaccactaaaatacattagatccaaattagtg |
2762512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 3395410 - 3395467
Alignment:
| Q |
59 |
cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt |
116 |
Q |
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|||| ||||||| ||| | ||||||||||||||| |||||||| |||| ||||||||| |
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| T |
3395410 |
cacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtt |
3395467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 23141753 - 23141810
Alignment:
| Q |
59 |
cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt |
116 |
Q |
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|||| ||||||| ||| | |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
23141753 |
cacaacttcacccaaaatcttaagacattagatacatgagtcatctcatttatatgtt |
23141810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 42797243 - 42797300
Alignment:
| Q |
59 |
cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt |
116 |
Q |
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|||| ||||||| ||| | |||||||||||||||||||||||| |||| ||||||||| |
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| T |
42797243 |
cacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt |
42797300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 38259275 - 38259319
Alignment:
| Q |
48 |
aattttaacaccacatcttcaccaaaagttttaagacattagata |
92 |
Q |
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|||||||||||||||| |||| || || ||||||||||||||||| |
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| T |
38259275 |
aattttaacaccacattttcatcagaaattttaagacattagata |
38259319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 50331916 - 50331973
Alignment:
| Q |
59 |
cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt |
116 |
Q |
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|
|||| ||||||| ||| | |||||||||||||||||||||||| |||| ||||||||| |
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| T |
50331916 |
cacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt |
50331973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 1599806 - 1599754
Alignment:
| Q |
64 |
cttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgtt |
116 |
Q |
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||||||| ||| | |||||||||||||||||||||||| |||| ||||||||| |
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| T |
1599806 |
cttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtt |
1599754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 45608 - 45678
Alignment:
| Q |
54 |
aacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtttaatt |
124 |
Q |
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||||||| ||||||||| ||| | |||||||||||| || || |||| ||||||||||||||| |||||| |
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| T |
45608 |
aacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt |
45678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 153179 - 153109
Alignment:
| Q |
54 |
aacaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtttaatt |
124 |
Q |
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||||||| ||||||||| ||| | |||||||||||| || || |||| ||||||||||||||| |||||| |
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| T |
153179 |
aacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt |
153109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 14633 - 14573
Alignment:
| Q |
59 |
cacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtt |
119 |
Q |
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|||| ||||||| ||| | ||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
14633 |
cacaacttcacccaaaatcttaagacattaaatatgtgagtcatctcatttatatgttgtt |
14573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 47113 - 47177
Alignment:
| Q |
55 |
acaccacatcttcaccaaaagttttaagacattagatacatgagtcagctcatttatatgttgtt |
119 |
Q |
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|||||||||||||||| ||||| ||||||||| || || || |||| |||| |||||||||||| |
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| T |
47113 |
acaccacatcttcacccaaagtcttaagacatgaggtatgtgtgtcatctcacttatatgttgtt |
47177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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