View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19017_high_12 (Length: 377)
Name: NF19017_high_12
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 186 - 359
Target Start/End: Original strand, 2102806 - 2102979
Alignment:
| Q |
186 |
ttgtccaattcaacaatgtaaggaaacaacacacattcatataatacaagtataataacattttcccatttggaaaaacagttcatttaagcacttttag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102806 |
ttgtccaattcaacaatgtaaggaaacaacacacattcatataatacaagtataataacattttcccatttggaaaaacagttcatttaagcacttttag |
2102905 |
T |
|
| Q |
286 |
cataagctcttatcatacaaatgcttatgtatacgttgtttcttatagtttttctcataagcttccctgaagag |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102906 |
cataagctcttatcatacaaatgcttatgtataagttgtttcttatagtttttctcataagcttccctgaagag |
2102979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 2102631 - 2102743
Alignment:
| Q |
11 |
agaatatgtcttgcaacgatgggatcggatacaacaacaaatgcttttggcccaaacgcaagtttatacacagagccatgctgtcacgttcaataatatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102631 |
agaatatgtcttgcaacgatgggatcggatacaacaacaaatgcttttggcccaaacgcaagtttatacacagagccatgctgtcacgttcaataatatc |
2102730 |
T |
|
| Q |
111 |
ctcataggataac |
123 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2102731 |
ctcataggataac |
2102743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 31884476 - 31884551
Alignment:
| Q |
253 |
atttggaaaaacagttcatttaagcacttttagcataagctcttatcatacaaatgcttatgtatacgttgtttct |
328 |
Q |
| |
|
||||||| ||||| ||| |||||||||| |||||||||| |||||||||||| ||| |||||||| ||| ||||| |
|
|
| T |
31884476 |
atttggataaacaactcaattaagcacttatagcataagcgcttatcatacaagtgcatatgtataagttatttct |
31884551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 7351766 - 7351731
Alignment:
| Q |
283 |
tagcataagctcttatcatacaaatgcttatgtata |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7351766 |
tagcataagctcttatcatataaatgcttatgtata |
7351731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 3223571 - 3223636
Alignment:
| Q |
253 |
atttggaaaaacagttcatttaagcacttttagcataagctcttatcatacaaatgcttatgtata |
318 |
Q |
| |
|
||||||| || ||||| | ||||||||||||||||||||| || | ||| ||||||||||||||| |
|
|
| T |
3223571 |
atttggataagcagtttaattaagcacttttagcataagcgtttgtaatataaatgcttatgtata |
3223636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University