View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19017_high_16 (Length: 315)
Name: NF19017_high_16
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 51332744 - 51332449
Alignment:
| Q |
1 |
atcttctcactctgacaccatggctccaccaaaaaagccttctccaagaaagagagaccccaatgatggaggggagggtcgcaagtgccttcattgcgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332744 |
atcttctcactctgacaccatggctccaccaaaaaagccttctccaagaaagagagaccccaatgatggaggggagggtcgcaagtgccttcattgcgcc |
51332645 |
T |
|
| Q |
101 |
actgataaaactccacaatggcgcactgggccattaggtccaaagacactttgcaatgcctgtggagtcagatacaagtcgggtcgactcgtacctgagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332644 |
actgataaaactccacaatggcgcactgggccattaggtccaaagacactttgcaatgcctgtggagtcagatacaagtcgggtcgactcgtacctgagt |
51332545 |
T |
|
| Q |
201 |
ataggcctgcagcaagcccaacatttgtgttgaccaagcattccaactcacatcgaaaggtgcaagagctccgacgccagaaggagatgatgaggg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332544 |
ataggcctgcagcaagcccaacatttgtgttgaccaagcattccaactcacatcgaaaggtgcaagagctccgacgccagaaggagatgatgaggg |
51332449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 121652 - 121755
Alignment:
| Q |
152 |
tgcaatgcctgtggagtcagatacaagtcgggtcgactcgtacctgagtataggcctgcagcaagcccaacatttgtgttgaccaagcattccaactcac |
251 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||| | || || || || ||||||||||| ||||| ||||||||| | || || || |||||||| | |
|
|
| T |
121652 |
tgcaatgcttgtggtgtaagatataagtcgggtcgattggtgcccgaatacaggcctgcagctagccctacatttgtgctcactaaacactccaactcgc |
121751 |
T |
|
| Q |
252 |
atcg |
255 |
Q |
| |
|
|||| |
|
|
| T |
121752 |
atcg |
121755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University