View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_high_2 (Length: 533)
Name: NF19017_high_2
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 2025560 - 2026014
Alignment:
| Q |
14 |
atatttgatgtgctcgtatccatatgaacaggaattatcttggagtatatttctaatacgaaattcggttggctcattcttgcgcgatattgataaggat |
113 |
Q |
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| T |
2025560 |
atatttgatgtgctcgtatccatatgaacaggaattatcttggagtatatttctaatatgaaattcggttggctcattcttgcgcgatatcgataacgat |
2025659 |
T |
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| Q |
114 |
caaaatattagcaatgcgatgtttgccttatgttcgagaaaatggagagcatatccataaattaacactatagcaaaagagaacctaaccttgaaaaaat |
213 |
Q |
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| T |
2025660 |
caaaatattagcaatgcgatgtttgccttatgttcgagaaaatggagagcatatccataaattaacactatagcagaagagaacctaaccttgaaaaaat |
2025759 |
T |
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| Q |
214 |
aactcaaatattgaaacgaatacacatttgatcaatagaatttttcggattctcagctataccggatggtatagaaaccaaaaggagtgtttctgctcat |
313 |
Q |
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| T |
2025760 |
aactcaaatattgaaacgaatacacatttgatcaatagaatttttcggattctcagctataccggatggtatagaaaccaaaaggagtgtttctgctcat |
2025859 |
T |
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| Q |
314 |
tgtcgtagcttctggttgcattgatatgctgagtgttgtgatacggagcgtcgacatctgagttatacctgatgtttgcatggatatggaagaataagtt |
413 |
Q |
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||| |||||||||| ||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
2025860 |
tgttgtagcttctgattgcattgagatgccgattgttgtgatatggagcgtcgacatctgagttatacctgatgtttgtatggatatggaaaaataagtt |
2025959 |
T |
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| Q |
414 |
atgtcatgtgccgcaatcttgggctacgacggggatattctttttaagaattatc |
468 |
Q |
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| T |
2025960 |
atgtcatgtgccgcaatctcgggctacgacggggatattctttttaagaattatc |
2026014 |
T |
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