View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_high_23 (Length: 238)
Name: NF19017_high_23
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42049152 - 42048931
Alignment:
| Q |
1 |
taattcttctgaggtggaatatgaatacattttcacatgtacctccaggctttcgttttcatccaaccgacgaagaacttgttgattactacctcaggaa |
100 |
Q |
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| T |
42049152 |
taattcttctgaggtggaatatgaatacattttcacatgtacctccaggctttcgttttcatccaaccgacgaagaacttgttgattactacctcaggaa |
42049053 |
T |
|
| Q |
101 |
gaaggtatcgtctaaaaagattgatctcgatgtcatcaaagacgttgatctctataaaattgaaccatgggatcttcaaggtatcgattcgacttctata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
42049052 |
gaaggtatcgtctaaaaagattgatctcgatgtcatcaaagacgttgatctctataaaattgaaccatgggatcttcaaggtatcgatccgacatctata |
42048953 |
T |
|
| Q |
201 |
ctacaaagccttaacaatcaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42048952 |
ctacaaagccttaacaatcaat |
42048931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 12850434 - 12850601
Alignment:
| Q |
17 |
gaatatgaatacattttcacatgtacctccaggctttcgttttcatccaaccgacgaagaacttgttgattactacctcaggaagaaggtatcgtctaaa |
116 |
Q |
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| T |
12850434 |
gaatatgaatactttttctcatgttcccccgggttttaggttccatcccacagatgaagaacttgtggattactaccttaggaagaaaattgcttcaaga |
12850533 |
T |
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| Q |
117 |
aagattgatctcgatgtcatcaaagacgttgatctctataaaattgaaccatgggatcttcaaggtat |
184 |
Q |
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| T |
12850534 |
aggattgatcttgatgtcataaaagatgttgacctttacaaaattgaaccatgggatcttgaaggtat |
12850601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 3574980 - 3575130
Alignment:
| Q |
33 |
tcacatgtacctccaggctttcgttttcatccaaccgacgaagaacttgttgattactacctcaggaagaaggtatcgtctaaaaagattgatctcgatg |
132 |
Q |
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||||| || ||||| || |||||||| ||||| || || ||||||||||||||| ||||||| ||||| ||| || | ||||||| ||||||||| ||| |
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| T |
3574980 |
tcacacgttcctcctggatttcgtttccatcccactgatgaagaacttgttgatcactaccttaggaaaaagatagcttctaaaaggattgatcttgata |
3575079 |
T |
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| Q |
133 |
tcatcaaagacgttgatctctataaaattgaaccatgggatcttcaaggta |
183 |
Q |
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|||| ||||| |||||||||||||| ||||| || |||||||| ||||||| |
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| T |
3575080 |
tcattaaagatgttgatctctataagattgagccgtgggatctacaaggta |
3575130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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