View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_high_24 (Length: 237)
Name: NF19017_high_24
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42204386 - 42204608
Alignment:
| Q |
1 |
tgttcatattggagatgtcttcgttcactcagaattaacgcagaagatatgccggtctgccactctcattgtttattgcctagctaaaaatgctcccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204386 |
tgttcatattggagatgtcttcgttcactcagaattaacgcagaagatatgccggtctgccactctcattgtttattgcctagctaaaaatgctcccata |
42204485 |
T |
|
| Q |
101 |
ttgttttcacttccatccatttgtgtagcagttaaaatgttacgaaccgaaaataaatggattgaaaactactatgatagaccaaaagaaaagaattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42204486 |
ttgttttcacttccatccatttgtgtagcagttaaaatgttacgaaccgaaaataaatggattgaaaactactatgatagaccaaaagaaaagaattgtt |
42204585 |
T |
|
| Q |
201 |
tcattgaaaattaatagaaaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42204586 |
tcattgaaaattaatagaaaatg |
42204608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42213254 - 42213476
Alignment:
| Q |
1 |
tgttcatattggagatgtcttcgttcactcagaattaacgcagaagatatgccggtctgccactctcattgtttattgcctagctaaaaatgctcccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213254 |
tgttcatattggagatgtcttcgttcactcagaattaacgcagaagatatgccggtctgccactctcattgtttattgcctagctaaaaatgctcccata |
42213353 |
T |
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| Q |
101 |
ttgttttcacttccatccatttgtgtagcagttaaaatgttacgaaccgaaaataaatggattgaaaactactatgatagaccaaaagaaaagaattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42213354 |
ttgttttcacttccatccatttgtgtagcagttaaaatgttacgaaccgaaaataaatggattgaaaactactatgatagaccaaaagaaaagaattgtt |
42213453 |
T |
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| Q |
201 |
tcattgaaaattaatagaaaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42213454 |
tcattgaaaattaatagaaaatg |
42213476 |
T |
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