View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19017_high_25 (Length: 235)

Name: NF19017_high_25
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19017_high_25
NF19017_high_25
[»] chr4 (2 HSPs)
chr4 (15-187)||(11016766-11016937)
chr4 (37-71)||(12068027-12068061)
[»] chr7 (2 HSPs)
chr7 (97-178)||(19112588-19112669)
chr7 (110-163)||(47609149-47609202)
[»] chr3 (4 HSPs)
chr3 (106-186)||(36903613-36903693)
chr3 (97-178)||(19155025-19155106)
chr3 (106-160)||(20909234-20909287)
chr3 (35-69)||(26786131-26786165)
[»] chr5 (1 HSPs)
chr5 (106-194)||(13876757-13876845)
[»] chr2 (2 HSPs)
chr2 (97-169)||(33765026-33765098)
chr2 (37-66)||(15953967-15953996)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 11016766 - 11016937
Alignment:
Q  15 agatgagatcatcaggtgttctaagtcaacaccatcagaccaatccaaatggattttttaaaagattatgtgagtgtttggatcaacttgaaaattatga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11016766 agatgagatcatcaggtgttctaagtcaacaccatcagaccaatccaaatagattttttaaaagattatgtgagtgtt-ggatcaacttgaaaattatga 11016864  T
Q  115 agctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgcaataccaaat 187  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11016865 agctacaaatattagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgtcgcaataccaaat 11016937  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 12068061 - 12068027
Alignment:
Q  37 aagtcaacaccatcagaccaatccaaatggatttt 71  Q
    |||||||||| ||||||||||||||||||||||||    
T  12068061 aagtcaacacgatcagaccaatccaaatggatttt 12068027  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 19112588 - 19112669
Alignment:
Q  97 tcaacttgaaaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgca 178  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  19112588 tcaacttggaaattatgaagctacaaatatgagcttttgctttgatgtgattttttaacgtgattttccttgatgtgccgca 19112669  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 47609149 - 47609202
Alignment:
Q  110 tatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgatttt 163  Q
    ||||||||||||| || |||||||||||||||||||| |||| |||||||||||    
T  47609149 tatgaagctacaaatacaagcttttgctttgatgtgaatttttaacgtgatttt 47609202  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 36903693 - 36903613
Alignment:
Q  106 aaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgcaataccaaa 186  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||| | ||| |||||||||    
T  36903693 aaattatgaagctacaaatataagcttttgctttgatgtgattttctaacgtgattttgtttgatgtaccgtaataccaaa 36903613  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 19155106 - 19155025
Alignment:
Q  97 tcaacttgaaaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgca 178  Q
    ||||| || ||| |||||||||| |||||||||||||||||||||||||| |||| ||||| ||||| ||||| ||| ||||    
T  19155106 tcaacgtggaaactatgaagctataattataagcttttgctttgatgtgaatttttaacgtaatttttcttgaaatgtcgca 19155025  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 20909234 - 20909287
Alignment:
Q  106 aaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgat 160  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||    
T  20909234 aaattatga-gctacaaatataagcttttcctttgatgtgattttttaacgtgat 20909287  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 26786131 - 26786165
Alignment:
Q  35 ctaagtcaacaccatcagaccaatccaaatggatt 69  Q
    ||||||||| |||||||||||||||||||||||||    
T  26786131 ctaagtcaataccatcagaccaatccaaatggatt 26786165  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 13876845 - 13876757
Alignment:
Q  106 aaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttgatatgccgcaataccaaataggccat 194  Q
    ||||||||||| ||||| |||||||||||||||| || |||||||| |||||||||||| ||||| | || ||||| |||| |||||||    
T  13876845 aaattatgaagttacaaatataagcttttgcttttatatgattttttaacgtgattttgtttgatgtaccacaatatcaaacaggccat 13876757  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 33765098 - 33765026
Alignment:
Q  97 tcaacttgaaaattatgaagctacaattataagcttttgctttgatgtgatttttgaacgtgattttgcttga 169  Q
    ||||| |||||| ||||||||||||| | | ||||||||||||||||||| |||| || || ||||| |||||    
T  33765098 tcaacgtgaaaactatgaagctacaaatctgagcttttgctttgatgtgaatttttaaagtaattttacttga 33765026  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 15953996 - 15953967
Alignment:
Q  37 aagtcaacaccatcagaccaatccaaatgg 66  Q
    ||||||||||||||||||||||||||||||    
T  15953996 aagtcaacaccatcagaccaatccaaatgg 15953967  T

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