View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_high_3 (Length: 517)
Name: NF19017_high_3
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Original strand, 44085499 - 44085983
Alignment:
| Q |
16 |
catttcatgtatatttcaatttatagttctgtttctatgtttagtaacgttaatgtaataaatgaatcatagtgtatctttacatgtataataaaggtct |
115 |
Q |
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| T |
44085499 |
cattttatgtatatttcaatttatagttctgtttctatgtttagtaacattaatgtaataaatgaatcatagtttatcttcacatgtataa---aggtct |
44085595 |
T |
|
| Q |
116 |
aaaatattaggtaaagaatacatggataagagagattctctcagttgtggtttaatcttaatctaaatagtatgtcagaaacaaaaaagatggatttaat |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085596 |
aaaatattaagtaaagaatacatggataagagagattctctcagttgtggtttaatcttaatctaaatagtatgtcagaaacaaaaaagatggatttaat |
44085695 |
T |
|
| Q |
216 |
ttaacaataaagatgtcaaggataagaggttctttaaagtgagaaataagaatatattcaccattaatatcatttaaagtgtaccatgatgttaacattt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085696 |
ttaacaataaagatgtcaaggataagaggttctttaaagtgagaaataagaatatattcaccattaatatcatttaaagtgtaccatgatgttaacattt |
44085795 |
T |
|
| Q |
316 |
aaggatagattcaaccttactcattttagaggcaaaattacttttaaagggacatttcccaatcagtaaagtttactaaagaataaagttaagttattta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
44085796 |
aaggatagattcaaccttactcattttagaggcaaaattacttttaaagggacatttcccaatcagtaaagtttactaaagaatatagttaagttatata |
44085895 |
T |
|
| Q |
416 |
acataccttttcaattgggtacactgttttcttgcaaccaacacatttttcttgagttccagcaaaaaatcttgaaaccttgttatat |
503 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085896 |
atataccttttcaattgggtacactgttttcttgcaaccaacacatttttcttgagttccagcaaaaaatcttgaaaccttgttatat |
44085983 |
T |
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