View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_high_6 (Length: 436)
Name: NF19017_high_6
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 34490259 - 34490592
Alignment:
| Q |
8 |
gagcagagactgaaaaaagt-gagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaacaactaccatggtagaagtgattgttg |
106 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34490259 |
gagcagaaactgaaaaaagttgagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaacaactaccatagtagaagtgattgttg |
34490358 |
T |
|
| Q |
107 |
ctgtcatcatcagtcatcttcatcatttaccacccacacatttgactacaaatgatgtatacgtgaattttaaccataatattatatttttcttcttctc |
206 |
Q |
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|||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||| |
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| T |
34490359 |
ttgtcatcatcggccatcttcaccatttaccacccacacatttgactacaaatgacgtatatgtgaattttaaccacaatatt---tttttcttcttctc |
34490455 |
T |
|
| Q |
207 |
ggccaaaaaataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagtctctttacaattgtcactttttctacaaattatattcttatt |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34490456 |
ggccaaaatataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagtctctttacaattgtcactttttctacaaattatattcttatt |
34490555 |
T |
|
| Q |
307 |
taactattgaaatttcaaggtttttatttatcatgat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34490556 |
taactattgaaatttcaaggtttttatttatcatgat |
34490592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 34514435 - 34514779
Alignment:
| Q |
16 |
actgaaaaaagtgagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaacaactaccatggtagaagtgattgttgctgtcatca |
115 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||| |||||||| |
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| T |
34514435 |
actgaaaaaag--agggatgagaaaagtcatggttcaaactcaaatggaagagggaaagaaaagcaactactatagtaaaagtgattgttgttgtcatca |
34514532 |
T |
|
| Q |
116 |
tcagtcatcttcatcatttaccacccacacatttgactacaaatgatgtatacgtgaattttaaccataatattatatttttcttcttctcggccaaaaa |
215 |
Q |
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|| |||||||| ||||| | ||| ||| |||||| |||||||||||||||||||| ||| || | |||||||||||||| |||||||| |
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| T |
34514533 |
tcgaccatcttcaccatttgact---acaaatt-------aaatgacgtatacgtgaattttaaccacaat-ttct-tttttcttcttctcagccaaaaa |
34514620 |
T |
|
| Q |
216 |
ataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagtctctttacaattgtcactttttctacaaattatattcttatttaactattg |
315 |
Q |
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||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||| | |
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| T |
34514621 |
ttaatgctgttcttataaaataaatttggaaaattataagcccctcagtctcttcacaattgtcactttttctaagaaatttattcttatttaactacag |
34514720 |
T |
|
| Q |
316 |
aaatttcaaggtttttatttatcatgatgttatctacaaactctaatttttctaatgac |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
34514721 |
aaatttcaaggtttttatttatcatgatgttatctactaactcaaatttttctaatgac |
34514779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 52 - 374
Target Start/End: Original strand, 27631149 - 27631459
Alignment:
| Q |
52 |
aaactcaaatggaagagggaaagaaaaacaactaccatggtagaagtgattgttgctgtcatcatcagtcatcttcatcatttaccacccacacatttga |
151 |
Q |
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||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| |||||||| ||||| | ||| ||| |
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| T |
27631149 |
aaactgaaatggaagagggaaagaaaagcaactaccatagtaaaagtgattgttgttgtcatcatcgaccatcttcaccatttgact---acaaatt--- |
27631242 |
T |
|
| Q |
152 |
ctacaaatgatgtatacgtgaattttaaccataatattatatttttcttcttctcggccaaaaaataatgttgttcttgtaaaataaatttggaaaatta |
251 |
Q |
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|||||| |||||||||||||||||||| |||||| | ||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||| |
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| T |
27631243 |
----aaatgacgtatacgtgaattttaaccacaatatttt--ttttcttcttctcagccaaaaattaatgttgttcttattaaataaatttggaaaatta |
27631336 |
T |
|
| Q |
252 |
aaagcccctcagtctctttacaattgtcactttttctacaaattatattcttatttaactattgaaatttcaaggtttttatttatcatgatgttatcta |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
27631337 |
aaagcccctcagtctctttacaattgtcactttttctaagaaatttattcttatttaactacagaaatttcaaggtttttatttattatgatgttatcta |
27631436 |
T |
|
| Q |
352 |
caaactctaatttttctaatgac |
374 |
Q |
| |
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| ||||| ||||||||||||||| |
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| T |
27631437 |
ctaactcaaatttttctaatgac |
27631459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 27625063 - 27625184
Alignment:
| Q |
11 |
cagagactgaaaaaagtgagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaacaactaccatggtagaagtgattgttgctgt |
110 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |
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| T |
27625063 |
cagaaactgaaaaagcagagggataagaaaagtcatggttcaaactcaaattgaa-------agaaaaacaattaccatagtaaaagtgattgttgctgt |
27625155 |
T |
|
| Q |
111 |
catcatcagtcatcttcatcatttaccac |
139 |
Q |
| |
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|||||| |||||||||| |||||||||| |
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| T |
27625156 |
catcattggtcatcttcaccatttaccac |
27625184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 34510855 - 34510976
Alignment:
| Q |
11 |
cagagactgaaaaaagtgagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaacaactaccatggtagaagtgattgttgctgt |
110 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |
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| T |
34510855 |
cagaaactgaaaaagcagagggataagaaaagtcatggttcaaactcaaattgaa-------agaaaaacaattaccatagtaaaagtgattgttgctgt |
34510947 |
T |
|
| Q |
111 |
catcatcagtcatcttcatcatttaccac |
139 |
Q |
| |
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|||||| |||||||||| |||||||||| |
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| T |
34510948 |
catcattggtcatcttcaccatttaccac |
34510976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 34491560 - 34491641
Alignment:
| Q |
339 |
atgatgttatctacaaactctaatttttctaatgactgatatcaattaggaaatttagttggccaactttaatgttgtctct |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
34491560 |
atgatgttatctacaaactcaaatttttctcatgactaatatctattaggaaattcagttggccaactttaatgctgtctct |
34491641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 34523760 - 34523832
Alignment:
| Q |
9 |
agcagagactgaaaaaagt-gagggataagaaaagtcatggttcaaactcaaatggaagagggaaagaaaaac |
80 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34523760 |
agcagaaactgaaaaaagcagagggataagaaaagtcatggttcaaactcagatggaagagggaaagaaaaac |
34523832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 27625243 - 27625302
Alignment:
| Q |
210 |
caaaaaataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagtctctt |
269 |
Q |
| |
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||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
27625243 |
caaaaaataattttattcttacaaaataaatttggaaaaataaaatcccctcagtttctt |
27625302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 34511035 - 34511089
Alignment:
| Q |
210 |
caaaaaataatgttgttcttgtaaaataaatttggaaaattaaaagcccctcagt |
264 |
Q |
| |
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||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
34511035 |
caaaaaataattttattcttacaaaataaatttggaaaaataaaatcccctcagt |
34511089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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