View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_low_15 (Length: 317)
Name: NF19017_low_15
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 45129161 - 45128869
Alignment:
| Q |
18 |
acaatttgctagctgttgataccaaagttgaattgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtc |
117 |
Q |
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| T |
45129161 |
acaatttgctagctgttgataccaaagttgaattgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtc |
45129062 |
T |
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| Q |
118 |
acatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaattactctcgttatgtaagtgagtacaatagagactcagtttcacctctt |
217 |
Q |
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| T |
45129061 |
acatggactaatatcagatgcaacttacaacatgttcactagagtgtgtaattactctcgttatgtaagtgagtacaatagagactcagtttcacctctt |
45128962 |
T |
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| Q |
218 |
tgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtgctg |
310 |
Q |
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| T |
45128961 |
tgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtgctg |
45128869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 309
Target Start/End: Complemental strand, 40280985 - 40280725
Alignment:
| Q |
49 |
attgcagttgggaaatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatggactaatatcagatgcaacttacaac |
148 |
Q |
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| T |
40280985 |
attgcagttgggaaatccacttctagaatatgccactgacttcaattcaagggctgagttcttctggtctcatggattgatatcagattcaacttacaaa |
40280886 |
T |
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| Q |
149 |
atgttcactagagtgtgtaattactctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaag |
248 |
Q |
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| T |
40280885 |
atgttcaccgcaggctgcaattattcgcagtatgtaagtgagtactatagaaactccatttccctgctttgttcaaaggtcatgagccaagtaagcagag |
40280786 |
T |
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| Q |
249 |
aaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtgct |
309 |
Q |
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| T |
40280785 |
aaaccagcaagtttgtggacaaatatgatgttacccttgatgtatgcatttcctcagtgct |
40280725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 6632346 - 6632284
Alignment:
| Q |
62 |
aatccagttctagaatatgcaactgatttcaattcaagggctgaattcttttggtcacatgga |
124 |
Q |
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| T |
6632346 |
aatccagttttagaatttgcaacagattttaattcaagagctgagttcttttggtctcatgga |
6632284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 6632166 - 6632101
Alignment:
| Q |
242 |
agtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtg |
307 |
Q |
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| T |
6632166 |
agtacagaaacaagcagatttgttgacaagtatgatgtcactcttgatgtttgtatatcttctgtg |
6632101 |
T |
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