View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_low_17 (Length: 311)
Name: NF19017_low_17
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 34583410 - 34583130
Alignment:
| Q |
18 |
aattgagtcatttccctcacaaacaatgtttctagctttccaattccaccaaatgccagctagaaatatttttacagcaggaccatttgagattcatgtt |
117 |
Q |
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| T |
34583410 |
aattgagtcatttccctcacaaacaatgtttctagctttccaattccaccaaatgccagctagaaatatatttgcagcaggaccatttgagattcatgtt |
34583311 |
T |
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| Q |
118 |
actaaagaagctgacatcaataaatcctaaagccttccaaaggttctaggcaaaagggcagtcacgaatacggtgaaggatagattcctcactactttga |
217 |
Q |
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| T |
34583310 |
actaaagaagttgacatcaataaatcctaaagccttccaaaagttctaggcaaaagggcagtcacgaatacggtgaaggatagattcctcactactttga |
34583211 |
T |
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| Q |
218 |
catctagaacataagttagaagtggtcatgttcctatttttcaac---aacaagagtaggaacaacatggtggcaagcaca |
295 |
Q |
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| T |
34583210 |
catctagaacataagttagaagtggtcatgttcctatttttcaacaaaaacaagagtaggaacaacatggtggcaagcaca |
34583130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 109 - 278
Target Start/End: Original strand, 13753590 - 13753760
Alignment:
| Q |
109 |
attcatgttactaaagaagctgacatcaataaatcctaaagccttccaaaggttctaggcaaaagggcagtcacgaatacggtgaaggatagattcctca |
208 |
Q |
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| T |
13753590 |
attcatgttactaaagaagttgacattaataaatcctagagtcttccaaaggttcatggcaaaagggcagtcacgaatacaatgaaggataaattcctca |
13753689 |
T |
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| Q |
209 |
ctactttgacatctagaacataagttagaagtggtcatgttcctatttttcaac--aacaagagtaggaaca |
278 |
Q |
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| T |
13753690 |
ctagtttgacatctagaacataagttagaagtggacatgttccta-ttttcaacaaaacaagagtaggaaca |
13753760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 13753480 - 13753528
Alignment:
| Q |
22 |
gagtcatttccctcacaaacaatgtttctagctttccaattccaccaaa |
70 |
Q |
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| T |
13753480 |
gagtcatttcccacacaaacaatgtttctagctttccaattccaccaaa |
13753528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 11362140 - 11362045
Alignment:
| Q |
202 |
ttcctcactactttgacatctagaacataagttagaagtggtcatgttcctatttttcaacaa--caagagtaggaacaacatggtggcaagcaca |
295 |
Q |
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| T |
11362140 |
ttcctcacttgtctgacatgtagcacataagttagaagtagtcatgttcatatttttcaacaaaccaggagtaggaataacatggtggcaagcaca |
11362045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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