View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_low_19 (Length: 264)
Name: NF19017_low_19
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 42204090 - 42203831
Alignment:
| Q |
1 |
tcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204090 |
tcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaac |
42203991 |
T |
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| Q |
101 |
tatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42203990 |
tatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgcctcttggagtaccttcacaa |
42203891 |
T |
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| Q |
201 |
agtaacataactaaagagagttatagctgcattttctctagcctccatcctttgctactc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42203890 |
agtaacataactaaagagagttatagctgcattttctctagcctccatcctttgttactc |
42203831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 42212958 - 42212699
Alignment:
| Q |
1 |
tcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212958 |
tcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaac |
42212859 |
T |
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| Q |
101 |
tatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42212858 |
tatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgcctcttggagtaccttcacaa |
42212759 |
T |
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| Q |
201 |
agtaacataactaaagagagttatagctgcattttctctagcctccatcctttgctactc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42212758 |
agtaacataactaaagagagttatagctgcattttctctagcctccatcctttgttactc |
42212699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42218908 - 42218703
Alignment:
| Q |
1 |
tcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaac |
100 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
42218908 |
tcctaccttcatgatggcttgcaagg-ttatcattatagctaatgctttgtcaaccatcccacgtcccgcatcgttcataaattgtatcaatggagcaac |
42218810 |
T |
|
| Q |
101 |
tatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcacctt-ttttgccacttggagtaccttcaca |
199 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| |
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| T |
42218809 |
tatcccggctttcacagctctagctttgtttccatgataaatacatagattaaatatagcggtagcagcacctttttttgcctcttggagtaccttcaca |
42218710 |
T |
|
| Q |
200 |
aagtaac |
206 |
Q |
| |
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||||||| |
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| T |
42218709 |
aagtaac |
42218703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42420170 - 42420375
Alignment:
| Q |
1 |
tcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaac |
100 |
Q |
| |
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|||| ||||||||||| | ||||||||| ||| |||||||| ||||| |||||||||||||| ||| |||| ||||||||||||||||| |||||||| |
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| T |
42420170 |
tccttccttcatgatgacctgcaaggatcgtcagtatagctagtgcttcgtcaaccatcccaccgcccgcatccttcataaatcgtatcaacggagcaac |
42420269 |
T |
|
| Q |
101 |
tatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaa |
200 |
Q |
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|||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
42420270 |
tatcccggctttaacagctctagctttgtttccttgataaatacatagattaaatatagcagtagctgcatcttttttgcctcttggagtaccttcacaa |
42420369 |
T |
|
| Q |
201 |
agtaac |
206 |
Q |
| |
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|||||| |
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| T |
42420370 |
agtaac |
42420375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 42218637 - 42218599
Alignment:
| Q |
210 |
actaaagagagttatagctgcattttctctagcctccat |
248 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
42218637 |
actaaagagagtcgtagctgcattttctctagcctccat |
42218599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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