View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19017_low_21 (Length: 244)
Name: NF19017_low_21
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 32544441 - 32544667
Alignment:
| Q |
9 |
actctgatcatggaaatatgaagacaaatcaccgacatgcaattaattttgctggccccatagttttacttttcatagttttaccttaaaattgtaccat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32544441 |
actctgatcatggaaatatgaagacaaatcaccgacatgcaattaattttgctggccccatagttttacttttcatagttttaccttaaaattgtaccat |
32544540 |
T |
|
| Q |
109 |
agcaattacatgcactaaaaaacaaatccttgatgtgcacatgctatggtttatgctaatacgaattaacaatagctggtcttaattgaatatcaataaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32544541 |
agcaattacatgcactaaaaaacaaatccttgatgtgcacatgctatgggttatgctaatacgaattaacaatagctggtcttaattgaatatcaataaa |
32544640 |
T |
|
| Q |
209 |
caagtatatgtccgacaacgagaataa |
235 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32544641 |
caagtatatgtccgacaacgagaataa |
32544667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University