View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_low_26 (Length: 227)
Name: NF19017_low_26
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49247786 - 49247565
Alignment:
| Q |
1 |
tcctgagccattactttggtttcttcttcctgagtcgttactttggtttctgcttgcggagccatttccttggttccttcttccttaggcacctcttttg |
100 |
Q |
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| T |
49247786 |
tcctgagccattactttggtttcttcttcctgagtcgttactttggtttctgcttgctgagccatttccttggttccttcttccttaggcacctcttttg |
49247687 |
T |
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| Q |
101 |
tttctacttcctgagccgtttcttcggtttcttcttcctgagcctttacttcttccgtggccacattatcttcctcctttgtgtctttgatttcttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49247686 |
tttctacttcctgagccgtttcttcggtttcttcttcctgagcctttacttcttccttggccacattatcttcctcctttgtgtctttgatttcttcttt |
49247587 |
T |
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| Q |
201 |
ttcttcttccttgataagagtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
49247586 |
ttcttcttccttgataagagtt |
49247565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 49247825 - 49247744
Alignment:
| Q |
70 |
ttggttccttcttccttaggcacctcttttgtttctacttcctgagccgtttcttcggtttcttcttcctgagcctttactt |
151 |
Q |
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|||||| |||||||||||| |||||||||||||||| ||||||||||| || ||| ||||||||||||||||| | |||||| |
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| T |
49247825 |
ttggtttcttcttccttagacacctcttttgtttcttcttcctgagccattactttggtttcttcttcctgagtcgttactt |
49247744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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