View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19017_low_27 (Length: 224)
Name: NF19017_low_27
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 44085459 - 44085249
Alignment:
| Q |
1 |
ccagcaaatatttgaagttagtatttaattaaccaagggagtaaatnnnnnnnttgaaatccttctgagatatgataggaacattaaaatta----tata |
96 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
44085459 |
ccagcaaatttttgaagttagtatttaattaaccaagggagtaaataaaaaaattgaaatccttctgagatatgataggaacataacaattaaatatata |
44085360 |
T |
|
| Q |
97 |
tcctagatcttaccatatatattcattggggttgttctttttt-caggtagctgttgatggagaatcttaccataagacttgcttcaagtgcacacatgg |
195 |
Q |
| |
|
||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
44085359 |
tccaagatctaaccatatat--tcattggggttgttctttttttcaggtagctgttgatggagaatcttaccataagaattgcttcaggtgcacacatgg |
44085262 |
T |
|
| Q |
196 |
aggttgtataatc |
208 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44085261 |
aggttgtataatc |
44085249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University