View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_low_28 (Length: 222)
Name: NF19017_low_28
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 43227295 - 43227496
Alignment:
| Q |
1 |
ataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43227295 |
ataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttgacaaaga |
43227394 |
T |
|
| Q |
101 |
aaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatgaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227395 |
aaaggaaaatgcttaacttatacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatgaa |
43227494 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
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|| |
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| T |
43227495 |
cc |
43227496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 43236803 - 43237007
Alignment:
| Q |
1 |
ataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaaga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||| | || |||||| ||||| |||| ||||||||||||||||| |||| | | |
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| T |
43236803 |
ataatggagaaaaaacaacttgcccactcaaatatccttctatcttcgtaagggacaccgtagtactttgggacataagtaaaagccaaattaatgacaa |
43236902 |
T |
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| Q |
101 |
aaaggaaaatgcttaacttgtacattcgac---tcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacat |
197 |
Q |
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||| ||||||||||||||| ||| | ||| || | |||||||||||||||||| |||| || |||| ||||||||| |||||| ||| |||||||| |
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| T |
43236903 |
aaaataaaatgcttaacttgaacagtggacccaacaaggccattgatagatagtcacgacctaaattcaaggaaagtagtcaaattagagccaaatacat |
43237002 |
T |
|
| Q |
198 |
gaacc |
202 |
Q |
| |
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|||| |
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| T |
43237003 |
aaacc |
43237007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 43244981 - 43245165
Alignment:
| Q |
1 |
ataatggagaaaaaaca-actgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaag |
99 |
Q |
| |
|
||||||||||||||| | ||| || ||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||||| | |
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| T |
43244981 |
ataatggagaaaaaaaagactaatgaactcaaatttccttcgatcttcttgaggaacaccgtagtacattggaatataagtaaaagccaacttaatgaca |
43245080 |
T |
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| Q |
100 |
aaaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaatta |
184 |
Q |
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||||| ||||||||||||| | ||||||| || |||||||||||||||||| |||| || |||| ||||||||||||||| |
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| T |
43245081 |
aaaagcaaaatgcttaactggagtattcgacccagagccattgatagatagtcactacctaaattcaagtaaagtagtaaaatta |
43245165 |
T |
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