View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19017_low_4 (Length: 516)

Name: NF19017_low_4
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19017_low_4
NF19017_low_4
[»] chr2 (7 HSPs)
chr2 (19-506)||(6409321-6409809)
chr2 (77-374)||(4318680-4318976)
chr2 (77-374)||(28626314-28626611)
chr2 (85-374)||(34212627-34212916)
chr2 (123-247)||(35581412-35581535)
chr2 (239-374)||(18977308-18977443)
chr2 (124-234)||(31015450-31015560)
[»] chr7 (3 HSPs)
chr7 (77-374)||(38176200-38176497)
chr7 (80-342)||(42415154-42415416)
chr7 (206-248)||(10486577-10486619)
[»] chr3 (5 HSPs)
chr3 (83-374)||(1527124-1527415)
chr3 (77-264)||(48798995-48799180)
chr3 (86-234)||(25500951-25501099)
chr3 (124-247)||(1930098-1930221)
chr3 (124-243)||(53920281-53920400)
[»] chr6 (2 HSPs)
chr6 (77-213)||(28909657-28909796)
chr6 (124-247)||(1100978-1101101)
[»] chr8 (5 HSPs)
chr8 (124-374)||(8618324-8618574)
chr8 (124-245)||(31385784-31385905)
chr8 (127-175)||(3664954-3665002)
chr8 (96-244)||(15074323-15074471)
chr8 (184-233)||(2704027-2704076)
[»] chr5 (2 HSPs)
chr5 (80-374)||(22497606-22497900)
chr5 (124-234)||(12186853-12186963)
[»] chr1 (5 HSPs)
chr1 (85-374)||(46342825-46343114)
chr1 (80-374)||(44585693-44585987)
chr1 (123-247)||(4816695-4816819)
chr1 (166-248)||(19023315-19023397)
chr1 (315-351)||(5299318-5299354)
[»] scaffold0094 (1 HSPs)
scaffold0094 (81-243)||(15214-15376)
[»] chr4 (1 HSPs)
chr4 (124-248)||(29542190-29542314)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 6409809 - 6409321
Alignment:
Q  19 ttataagatatgttagtaactgatcctgattaaggagcaataatcaatttannnnnnn-accaacaaaaactcatatcatttcattcatcacacaatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||    
T  6409809 ttataagatatgttagtaactgatcctgattaaggagcaataatcaattaatttttttgaccaacaaaaactcatatcatttcattcatcacacaatttg 6409710  T
Q  118 gaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaa 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||| || ||||||||||||    
T  6409709 gaatttaagatggaatcaaattaaagacttggtgacgagcttgtaatattgacactctagcgaaactacgagcgacaatattcgcttctctcctaacaaa 6409610  T
Q  218 acttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaaattccacctggttgttattcttatcatatatactatca 317  Q
    |||||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6409609 acttatcttaaaatttgtaaattgttgtaatagtgacctgcagtcatcaatgatactaccaaattctacctggttgttattcttatcatatatactatca 6409510  T
Q  318 accactgatttacaatctagttctatttgcacatttgataattctaactgtccaagctaatttattaataataggtcatatcaacatatttagcaacata 417  Q
    ||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409509 accactagtttacaatctagttctattttcacatttgataattctaactgtccaagctaatttattaataataggtcatatcaacatatttagcaacata 6409410  T
Q  418 aacaatggctatcaaagaaacatatctgtaatatacacaaaatgaaatccatggagtatatgtgtatatggtgaagtagctaagaataa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409409 aacaatggctatcaaagaaacatatctgtaatatacacaaaatgaaatccatggagtatatgtgtatatggtgaagtagctaagaataa 6409321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 77 - 374
Target Start/End: Original strand, 4318680 - 4318976
Alignment:
Q  77 accaacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacccta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4318680 accaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacccta 4318779  T
Q  177 gcgaaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactac 276  Q
    |||||||||||||||||| ||||   || ||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||    
T  4318780 gcgaaactatgagcgacaacatttacttgtctcctaacaaaacttatcttaaagtttgtaaatttttgtaatagtgacctgcagtcatcaatgatactac 4318879  T
Q  277 caaattccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
    |||||||  ||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  4318880 caaattctgcctggttgttattcttatcatatatgctatcaa-cactagtttacaatctagttctaattgcacatttgataattttaactgtccaagc 4318976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 77 - 374
Target Start/End: Original strand, 28626314 - 28626611
Alignment:
Q  77 accaacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacccta 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28626314 accaacaaaaactcataccatttcattcatcacacaatttggaatacaaaatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacctta 28626413  T
Q  177 gcgaaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactac 276  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||  ||||||||||    
T  28626414 gcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagtttgtacattgttgtaatagttacctgcagtcattgatgatactac 28626513  T
Q  277 caaattccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
    |||||||  |||||| |||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  28626514 caaattcttcctggtagttattcttatcatatatgctatcaaccactagtttacaatctagttctattagcacatttgataattctaactatccaagc 28626611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 85 - 374
Target Start/End: Complemental strand, 34212916 - 34212627
Alignment:
Q  85 aaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaact 184  Q
    |||||||||| |||||||||||| ||   |||| ||| ||||||||||||||||||||||| |||||| || | |||||||||||||| || || || ||    
T  34212916 aaactcatattatttcattcatcgcaaggtttgtaatataagatggaatcaaatcaaagacatggtgaggaacatgtaatattgacactcttgctaagct 34212817  T
Q  185 atgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaaattcc 284  Q
    || ||||||| |||||| || ||||||||||||| ||||||||||||||||  ||||||||||  ||||||| || ||| | |||||| | ||||||||     
T  34212816 ataagcgacaacattcgcttgtctcctaacaaaatttatcttaaagtttgtgaattgttgtaaaagtgacatacaatcagctatgatattgccaaattcg 34212717  T
Q  285 acctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
       ||||| |||||||||||| |||| ||||||||||||   |||||||||||||| || |||||||   ||||| | ||||||||||||    
T  34212716 gtttggttattattcttatcacatatgctatcaaccactagcttacaatctagttcaatgtgcacatccaataatcccaactgtccaagc 34212627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 35581412 - 35581535
Alignment:
Q  123 taagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaactta 222  Q
    |||||||||||||||||||| | || ||||| ||  |  ||| |||||||||| || | | |||||||||||  ||| |||| ||| |||||||||||||    
T  35581412 taagatggaatcaaatcaaaaatttagtgactaggatacaatcttgacacccttgc-agagtatgagcgacaatattagtttgtcttctaacaaaactta 35581510  T
Q  223 tcttaaagtttgtatattgttgtaa 247  Q
    ||||||||||   ||||||||||||    
T  35581511 tcttaaagttatgatattgttgtaa 35581535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 374
Target Start/End: Original strand, 18977308 - 18977443
Alignment:
Q  239 ttgttgtaattgtgacatgcagtcatcaatgatactaccaaattccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagt 338  Q
    |||||||||  ||||||| |||||| |  ||||| | ||||||||  | ||||| |||||||||||| |||| ||||||||||||   ||||||||||||    
T  18977308 ttgttgtaaaagtgacatacagtcagctttgatattgccaaattcggcttggttattattcttatcacatatgctatcaaccactagcttacaatctagt 18977407  T
Q  339 tctatttgcacatttgataattctaactgtccaagc 374  Q
    |  || |||||||   ||||| | ||||||||||||    
T  18977408 ttaatgtgcacatccaataatcccaactgtccaagc 18977443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 31015450 - 31015560
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    ||||||||||||||||||| |||||||||||||| || | |  ||||||| | || || ||||| | ||||  ||| | ||  |||||||||||| ||||    
T  31015450 aagatggaatcaaatcaaacacttggtgacgagcatgcattcgtgacacctttgctaagctatgggtgacaaaatttgcttgcctcctaacaaaatttat 31015549  T
Q  224 cttaaagtttg 234  Q
    |||||||||||    
T  31015550 cttaaagtttg 31015560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 77 - 374
Target Start/End: Original strand, 38176200 - 38176497
Alignment:
Q  77 accaacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacccta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38176200 accaacaaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacacccta 38176299  T
Q  177 gcgaaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactac 276  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  38176300 gcgaaactatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagtttgtaaattgttgtaatagtgacctgcagtcatcaatgatactac 38176399  T
Q  277 caaattccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
    |||||||  ||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38176400 caaattctgcctggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagc 38176497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 342
Target Start/End: Complemental strand, 42415416 - 42415154
Alignment:
Q  80 aacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcg 179  Q
    ||||||||||||||| ||||||||  |||||  | ||  ||| || |||||||||||||||||  | ||||||||||| |  ||| | ||| |||||||     
T  42415416 aacaaaaactcatattatttcatttctcacaatagtttcaatatatgatggaatcaaatcaaactcctggtgacgagcattcaatctagacgccctagct 42415317  T
Q  180 aaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaa 279  Q
    ||  |||||||||||  ||| | || ||||||||||||||||||| ||||||||| ||| |||| |||  | |||   || ||    |||||||||||||    
T  42415316 aacgtatgagcgacaaaattagcttgtctcctaacaaaacttatcctaaagtttggataatgttttaaacgcgaccgacattcggatatgatactaccaa 42415217  T
Q  280 attccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttcta 342  Q
    | ||| | || ||| ||||| ||||| | || ||||||||||||  ||| |||||||||||||    
T  42415216 actccgcttgattgctattcctatcaaaaatgctatcaaccactagtttgcaatctagttcta 42415154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 10486577 - 10486619
Alignment:
Q  206 tctcctaacaaaacttatcttaaagtttgtatattgttgtaat 248  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  10486577 tctcctaacaaaacttatcttaaagtttgaaaattgttgtaat 10486619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 83 - 374
Target Start/End: Complemental strand, 1527415 - 1527124
Alignment:
Q  83 aaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1527415 aaaaactcatatcatttcattcatcacacaatttggaatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaa 1527316  T
Q  183 ctatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaaatt 282  Q
    |||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  1527315 ctatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagtttgtaaattgttgtaatagtgacctgcagtcatcaatgatactaccaaatt 1527216  T
Q  283 ccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
    |  ||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1527215 ctgcctggttgttattcttatcatatatgctatccaccactagtttacaatctagttctaattgcacatttgataattctaactgtccaagc 1527124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 48798995 - 48799180
Alignment:
Q  77 accaacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacccta 176  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||  ||||||||||||||||| ||| |||| ||| | ||||||||||||||||||||    
T  48798995 accaacaaaaactcat--catttcattcatcacacaatttgaaatacaagatggaatcaaatcatagatttggcgaccaacttgtaatattgacacccta 48799092  T
Q  177 gcgaaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcat 264  Q
     ||||||||| ||||||| |||||| || ||  ||||| |||||| |||||||||||||| ||||||||||| ||||| |||||||||    
T  48799093 acgaaactataagcgacaacattcgcttgtcatctaacgaaacttttcttaaagtttgtaaattgttgtaatagtgacttgcagtcat 48799180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 25501099 - 25500951
Alignment:
Q  86 aactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaacta 185  Q
    |||| |||| |||||||||||||||  | ||  |||  ||||||||||||||| ||||||| |||||||||| |  ||| ||||  |||| || ||||||    
T  25501099 aacttatattatttcattcatcacaatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaacta 25501000  T
Q  186 tgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttg 234  Q
    || ||||||| ||| | || |||||| ||| || |||||||||||||||    
T  25500999 tgggcgacacaatttgcttgtctccttacataatttatcttaaagtttg 25500951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 1930221 - 1930098
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    |||||||||||||||||||   |||||||||||| |||||| ||||| |||  || ||| |||||| ||||  ||| |  ||||||||| ||||||||||    
T  1930221 aagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgacgcccctgctaaagtatgagtgacataattagcatttctcctagcaaaacttat 1930122  T
Q  224 cttaaagtttgtatattgttgtaa 247  Q
     |||||||||| || || ||||||    
T  1930121 tttaaagtttggatgttattgtaa 1930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 53920400 - 53920281
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    |||||||||||||| ||||  ||||||||||||| |  ||| | ||| ||||||| ||  |||||||||||  ||| | || ||| ||||||||||| ||    
T  53920400 aagatggaatcaaaacaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtcttctaacaaaactcat 53920301  T
Q  224 cttaaagtttgtatattgtt 243  Q
    ||||||||||| ||| ||||    
T  53920300 cttaaagtttggataatgtt 53920281  T

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Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 28909657 - 28909796
Alignment:
Q  77 accaacaaaaactcatatca---tttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacc 173  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909657 accaacaaaaactcatatcatcatttcattcatcacacaatttggaatgcaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacacc 28909756  T
Q  174 ctagcgaaactatgagcgacaccattcgtttttctcctaa 213  Q
    |||||||||||||||| |||| |||||| || ||||||||    
T  28909757 ctagcgaaactatgagtgacaacattcgcttgtctcctaa 28909796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 1100978 - 1101101
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    |||||||||||||||||||   |||||||||||| |||||| ||||| |||   | ||| |||||||||||  ||| | || ||||||| |||||||| |    
T  1100978 aagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgactcccctactaaagtatgagcgacaaaatttgattgtctcctagcaaaactttt 1101077  T
Q  224 cttaaagtttgtatattgttgtaa 247  Q
    ||||||||||| || |||||||||    
T  1101078 cttaaagtttggatgttgttgtaa 1101101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 124 - 374
Target Start/End: Original strand, 8618324 - 8618574
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    |||||||||||||||| ||||  ||||||||||  ||||||||||||||||| || || |||||||||||| |||||| || ||||||||||||||||||    
T  8618324 aagatggaatcaaatcgaagaaatggtgacgaggatgtaatattgacacccttgctaagctatgagcgacaacattcgcttgtctcctaacaaaacttat 8618423  T
Q  224 cttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaaattccacctggttgttattcttatcatatatactatcaaccact 323  Q
    ||| ||||||||  ||||||||||  ||||| | || ||| | |||||| | |||||||   | ||||| |||||||||||| |||| ||||||||||||    
T  8618424 cttgaagtttgtgaattgttgtaaaagtgacctacaatcagctatgatattgccaaatttggcttggttattattcttatcacatatgctatcaaccact 8618523  T
Q  324 gatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
       |||||||||||||| || ||||||| ||||||| | ||||||||||||    
T  8618524 agcttacaatctagttcgatgtgcacatctgataatcccaactgtccaagc 8618574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 31385784 - 31385905
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaactt-a 222  Q
    ||||| |||||||||||||   ||| |||| ||| |||||| |||||||||| || ||| |||||| ||||  ||| | || |||||||||||||||| |    
T  31385784 aagatagaatcaaatcaaactgttgatgacaagcatgtaattttgacaccct-gctaaagtatgagtgacaaaattagcttgtctcctaacaaaacttaa 31385882  T
Q  223 tcttaaagtttgtatattgttgt 245  Q
    ||||||||||||||| |||||||    
T  31385883 tcttaaagtttgtattttgttgt 31385905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 3665002 - 3664954
Alignment:
Q  127 atggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccct 175  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  3665002 atggaaacaaatcaaagacttggtgacgagcgtgtaattttgacaccct 3664954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 15074323 - 15074471
Alignment:
Q  96 atttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacac 195  Q
    |||||||||||||||  | | | ||| ||| || |||||||||||||||  || |||||||| |  ||| ||||   ||| || | ||||||||||||||    
T  15074323 atttcattcatcacaatagtagaaatataaaatagaatcaaatcaaagatatgttgacgagcatacaattttgatgtccttgctatactatgagcgacac 15074422  T
Q  196 cattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttg 244  Q
     ||| | || ||| ||||||||||||||||||||||||| || ||||||    
T  15074423 aatttgcttgtcttctaacaaaacttatcttaaagtttggattttgttg 15074471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 2704027 - 2704076
Alignment:
Q  184 tatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagttt 233  Q
    |||||||||||  ||| | || ||||||||||||||||||||||||||||    
T  2704027 tatgagcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 2704076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 80 - 374
Target Start/End: Original strand, 22497606 - 22497900
Alignment:
Q  80 aacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcg 179  Q
    |||| |||||||||| |||||||||||| ||   |||| |||  |||| |||||||||||||||||  |||||||||| ||||||||||||||||| ||     
T  22497606 aacataaactcatattatttcattcatcgcaaggtttgtaatacaagaaggaatcaaatcaaagacacggtgacgagcatgtaatattgacacccttgct 22497705  T
Q  180 aaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaa 279  Q
    ||  |||||| |||| |||||| || ||||||||||||||||||||||||||||||  ||||||| ||  ||||||| || | | | |||||| | ||||    
T  22497706 aagttatgagtgacaacattcgcttgtctcctaacaaaacttatcttaaagtttgtgaattgttgcaaaagtgacatacaattagctatgatattgccaa 22497805  T
Q  280 attccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
    ||||  | ||||| |||||||||||| |||| ||||||||||||   |||||||||||||| || |||||||  |||||| | |||| |||||||    
T  22497806 attcggcttggttattattcttatcacatatgctatcaaccactatcttacaatctagttcaatgtgcacatccgataatcccaactctccaagc 22497900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 12186963 - 12186853
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    ||||||||||||||||||| |||||||||||||| || |    ||||||| | || || ||||| |||||   ||||| ||  |||||||||||||||||    
T  12186963 aagatggaatcaaatcaaacacttggtgacgagcatgcatccgtgacacctttgctaagctatgggcgacggaattcgcttgcctcctaacaaaacttat 12186864  T
Q  224 cttaaagtttg 234  Q
    |||||||||||    
T  12186863 cttaaagtttg 12186853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 85 - 374
Target Start/End: Complemental strand, 46343114 - 46342825
Alignment:
Q  85 aaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaact 184  Q
    |||||||||| |||||||||||  ||   |||| |||  |||||| ||||||||||||||  ||||||| | | ||||||||||||| ||| || ||  |    
T  46343114 aaactcatattatttcattcatagcaaggtttgtaatacaagatgaaatcaaatcaaagatatggtgaccaacatgtaatattgacatccttgctaagat 46343015  T
Q  185 atgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaaattcc 284  Q
    |||||||||| |||||| || |||||||||||||||||||||| |||||||  ||||||||||  ||||| | || ||| | |||||| |  |||||||     
T  46343014 atgagcgacaacattcgcttgtctcctaacaaaacttatcttagagtttgtgaattgttgtaaaagtgacctacaatcaactatgatattgtcaaattcg 46342915  T
Q  285 acctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
     | ||||| |||||||||||| |||| ||||||||||||  ||||||||||||||| || ||||||| | ||||| |||| |||||||||    
T  46342914 gcttggttattattcttatcacatatgctatcaaccacttgtttacaatctagttcaatgtgcacatctaataatcctaattgtccaagc 46342825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 374
Target Start/End: Original strand, 44585693 - 44585987
Alignment:
Q  80 aacaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcg 179  Q
    |||| |||||| ||| |||||||||||| ||  ||||| |||  | |||||||| |||||||| |||||||||| | | ||||| ||  ||||||| ||     
T  44585693 aacataaactcgtattatttcattcatcgcaagatttgtaatacatgatggaattaaatcaaaaacttggtgacaaacatgtaacatcaacacccttgct 44585792  T
Q  180 aaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaattgtgacatgcagtcatcaatgatactaccaa 279  Q
    || |||||||||||| ||||||| | |||||| |||||||||||||||||||||||  || ||| |||  ||||| | || |||   |||||| |  |||    
T  44585793 aagctatgagcgacaacattcgtctgtctcctgacaaaacttatcttaaagtttgtgaatagttataaaagtgacctacaatcaagtatgatattgtcaa 44585892  T
Q  280 attccacctggttgttattcttatcatatatactatcaaccactgatttacaatctagttctatttgcacatttgataattctaactgtccaagc 374  Q
    ||||  | ||||| |||||||||||| |||| ||||||||||||  ||||||||||||||| || ||||||| ||||||| | ||||||| ||||    
T  44585893 attcagcttggttattattcttatcacatatgctatcaaccactagtttacaatctagttcaatgtgcacatatgataatcccaactgtcaaagc 44585987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 4816819 - 4816695
Alignment:
Q  123 taagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaactta 222  Q
    ||||||| ||||||||||||||||||||||||||| |  ||| ||||| |||| || || ||||| ||||||  ||| | || |||||| ||| || |||    
T  4816819 taagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtctccttacataattta 4816720  T
Q  223 tcttaaagtttgtatattgttgtaa 247  Q
    |||||||||||| | | ||||||||    
T  4816719 tcttaaagtttggaaaatgttgtaa 4816695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 19023315 - 19023397
Alignment:
Q  166 ttgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgttgtaat 248  Q
    ||||| ||||||| || ||||||| || |  ||| |||| ||||||||||||||||||||||||||||| | |||||||||||    
T  19023315 ttgactccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaat 19023397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 5299354 - 5299318
Alignment:
Q  315 tcaaccactgatttacaatctagttctatttgcacat 351  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  5299354 tcaaccactaatttacaatctagttctatgtgcacat 5299318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 15376 - 15214
Alignment:
Q  81 acaaaaactcatatcatttcattcatcacacaatttggaatttaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcga 180  Q
    |||||||||||||| ||||||||  |||||  | ||  ||| ||| ||||||| ||||||||  ||||||||||||| |  ||| | ||| ||||||| |    
T  15376 acaaaaactcatattatttcatttctcacaatagtttcaatataaaatggaattaaatcaaactcttggtgacgagcattcaatctagacgccctagcta 15277  T
Q  181 aactatgagcgacaccattcgtttttctcctaacaaaacttatcttaaagtttgtatattgtt 243  Q
    |  |||||||||||  ||| | || ||||||||||||||||||||||||||||| ||| ||||    
T  15276 acgtatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttggataatgtt 15214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 29542314 - 29542190
Alignment:
Q  124 aagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaccattcgtttttctcctaacaaaacttat 223  Q
    ||||||||||| ||||||| || ||||||||||| |  ||| ||||| ||||||| || | ||| ||||||  ||| | || | ||||||||||| ||||    
T  29542314 aagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaatttat 29542215  T
Q  224 cttaaagtttgtatattgttgtaat 248  Q
    ||||||||||| | |||||||||||    
T  29542214 cttaaagtttgaaaattgttgtaat 29542190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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