View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19017_low_7 (Length: 424)
Name: NF19017_low_7
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_7 |
 | |
|
| [»] scaffold2177 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 44 - 413
Target Start/End: Complemental strand, 30577124 - 30576754
Alignment:
| Q |
44 |
cttgtcttgacaactgtagctggagtcggtctatactttatactcagtaaggcaaacagttactattatagtagtatataaatcctagtagtcatataga |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30577124 |
cttgtcttgacaactgtagctggagtcggtctataatttatactcagtaaggcaaacagttactattatagtcgtatataaatcctagtagtcatataga |
30577025 |
T |
|
| Q |
144 |
atagtggtaattctctatttatattaagctaaccctcaccaattctcacattagaatattagcagataggaacattaattcattctcaatctgttgagcc |
243 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30577024 |
atagtggtaattctctattgatattaagctaaccctcaccaattctcacattagaatattagcagataggaacattaattcattctcaatctgttgagcc |
30576925 |
T |
|
| Q |
244 |
atttattctttaattcgatcctttcttttatgaatgcggttcnnnnnnnacaatttggatactcaactcttgatatcaacatctagtgggggcgttacaa |
343 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30576924 |
atttattctttaatttgatcctttcttttatgaatgcggttctttttttacaatttggatactcaactcttgatatcaacatctagtgggggcgttacaa |
30576825 |
T |
|
| Q |
344 |
gtttcttgatattcttaaaccagactaagttggtttgagg-nnnnnnnccccctaagttagctgtgatgat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30576824 |
gtttcttgatattcttaaaccagactaagttggtttgaggttttttttccccctaagttagctgtgatgat |
30576754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 9783270 - 9783336
Alignment:
| Q |
177 |
cctcaccaattctcacattagaatattagcagataggaacatt--aattcattctcaatctgttgag |
241 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
9783270 |
cctcaccaatgctcaccttagaatattggcagatatgaacattttaattctttctcaatctgctgag |
9783336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2177 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2177
Description:
Target: scaffold2177; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 664 - 730
Alignment:
| Q |
137 |
atatagaatagtggtaattctctatttatattaagctaa-ccctcaccaattctcacattagaatat |
202 |
Q |
| |
|
|||||||||| |||||| |||| ||| |||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
664 |
atatagaatattggtaactctcaattgatattaagctaatgcctccccaattctcagattagaatat |
730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University