View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19017_low_8 (Length: 417)
Name: NF19017_low_8
Description: NF19017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19017_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 11016705 - 11016301
Alignment:
| Q |
1 |
aataatctttaaccagaattcacttacatgtggcctaatttcaaactagcaagtctcattttcttcaaaacatagaggagcatgaatacgaaaaaccaaa |
100 |
Q |
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| T |
11016705 |
aataatctttaaccagaattcacttacatgtggcctaatttcaaactagcaagtctcattttcttcaaaacatagaggagcatgaatacaaaaaaccaaa |
11016606 |
T |
|
| Q |
101 |
aacataaatacaaccaaagtagaaaagcttgaatattgtagtaacataccatatttagcaatagtgtgaacaacaaaaggcaaaacacgaggagcaatat |
200 |
Q |
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| T |
11016605 |
aacataaatacaaccaaagtagaaaagcttgaatattgtagtaacataccgtatttagcaatagtatgaacaacaaaaggcaaaacacgaggagcaatat |
11016506 |
T |
|
| Q |
201 |
cattagagtaaggatccataggtttagatttagcttctttgatcattttaaccatatctctaatatctccaaccatgagtctatatgaatttcctttcag |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11016505 |
cattagagtaaggatccataggtttagacttagcttctttgatcattttaaccatatctctaatatctccaaccatgagtctatatgaatttccttttag |
11016406 |
T |
|
| Q |
301 |
accttgttgtttgagacgtttctctatcctttttggtgtgaaccaaatccaatccagtgcactccaaatccaccatatcaacactgaactaatcacagtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11016405 |
accttgttgtttgagacgtttctctatcctttttggtgtgaaccaaatccaatccagtgcactccaaatccaccatatcaacactgaagtaatcacagtg |
11016306 |
T |
|
| Q |
401 |
atgat |
405 |
Q |
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||||| |
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| T |
11016305 |
atgat |
11016301 |
T |
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