View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19018_high_1 (Length: 485)
Name: NF19018_high_1
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 131 - 475
Target Start/End: Original strand, 2267319 - 2267663
Alignment:
| Q |
131 |
aagagagtattcaattctttcttttgnnnnnnnnnttacattaattcatccctcatacatgaaaatatttcataaatgattgaagacatcgtttataatt |
230 |
Q |
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| T |
2267319 |
aagagagtattcaattctttcttttgaaaaaaaaattacatttattcatcccttatacatgaaagtatttcataaatgattgaagacatcgtttataatt |
2267418 |
T |
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| Q |
231 |
aaagatcaatactaatttagactctaaaacagaaaaatccgtgaacaaagtgtcacctaatcagagaggcgtgatatatgtgatatctcttcatgtgctg |
330 |
Q |
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| T |
2267419 |
aaagatcaatactaatttagactctaaaacagaagaatccgtgaacaaagtgtcacctaatcagagaggcttgatatatgtgatatctcttcatgtgctg |
2267518 |
T |
|
| Q |
331 |
gtatacgagttacaattgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaag |
430 |
Q |
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| T |
2267519 |
gtatacgagttacagttgtgacaccaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaatctgtaattctattcagtaagaag |
2267618 |
T |
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| Q |
431 |
agactgaatccaaattatttcacttgttctagtggctagtctctg |
475 |
Q |
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| T |
2267619 |
agactgaatccaaattatttcacttgttccagtggctagtctctg |
2267663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 2267206 - 2267266
Alignment:
| Q |
18 |
caatttttgcagaaatgtgttttggtagtgtggcagcgactgttcccttggcgaggactac |
78 |
Q |
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| T |
2267206 |
caatttttgcagaaatgtgttttggtagtgtggcagcgactgttccctttgcgaggactac |
2267266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 650638 - 650519
Alignment:
| Q |
345 |
attgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaagagactgaatccaaa |
444 |
Q |
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| T |
650638 |
attgtgacacgaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaacctgta-----attcagtaagaagagactgaatccaaa |
650544 |
T |
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| Q |
445 |
ttatttcacttgttctagtggctag |
469 |
Q |
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| T |
650543 |
ttatttcacttgttcttatggctag |
650519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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