View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19018_high_3 (Length: 440)
Name: NF19018_high_3
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 8468446 - 8468035
Alignment:
| Q |
15 |
actacatatctggtaattgatagtggcacctaccctgcaatggggggctgcaattatcatgctgtctgtcctaatttatcctacctgatttctgaaagga |
114 |
Q |
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| T |
8468446 |
actacatatctggtaattgatagtggcacctaccctgcaatgggaggctgcaattatcatgctgtctgtcctaatttatcctacctgatttctgaaagga |
8468347 |
T |
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| Q |
115 |
gttgttcatcagctttgaggagcttattattggtgcttttgattttattcttatatttgcattatcagtttgttggtgacttttagtaggtgcaactttt |
214 |
Q |
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| T |
8468346 |
gttgttcatcagctttgaggagcttattattggtgcttttgattttattcttatatttgcattatcagtttgttggtgacttttagtaggtgcaactttt |
8468247 |
T |
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| Q |
215 |
taatacacaaaatactcatttcagcctataaatgttcaaataggttttatttacttggataattttatattttcttttgtaagatgtatttaaaagttga |
314 |
Q |
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| T |
8468246 |
taatacacaaaatactcatttcagcctataaatgttcaaataggttttatttacttggataattttatattttcttttgtaagatgtatttaaaagttga |
8468147 |
T |
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| Q |
315 |
aatatatataattttcaattactaatacatgcagagaaaatttggtgaaatggacatattaaatttgtttggtcctttgatgtgatctatagggcgattt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8468146 |
aatatatataattttcaattactaatacatgcagagaaaatttggtgaaatggacatattaaatttgtttggtcctttgatgtgatctatagggcgattt |
8468047 |
T |
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| Q |
415 |
gttgaagatttt |
426 |
Q |
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| T |
8468046 |
gttgaagatttt |
8468035 |
T |
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