View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19018_high_5 (Length: 386)
Name: NF19018_high_5
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_high_5 |
 | |
|
| [»] scaffold0147 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 9059 - 9419
Alignment:
| Q |
11 |
cagagaaagataattgcgcctgagttgtacctagacaaggtgaaggtaagtggaatttgaataaatcgtcattgttaggcgatgaactatttagtacaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9059 |
cagagaaagataattgcgcctgagttgtacctagacaaggtgaaggtaagtggaatttgaataaatcgtcattgttaggcgatgaactatttagtacaaa |
9158 |
T |
|
| Q |
111 |
ttttcgtcatatagcggctatagaactatagtatagtggaatttgcacaaaacgctatttcttcgcaatccacaattgacaacactaatggtattgctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9159 |
ttttcgtcatatagcggctatagaactatagtatagtggaatttgcacaaaacgctatttcttcgcaatccgcaattgacaacactaatggtattgctgt |
9258 |
T |
|
| Q |
211 |
cacatacaactaactgcttataaatgttgattaaaatagcattctaataattttctttttatgtaaattatgttgaaggcaatggttgatcaaatagttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9259 |
cacatacaactaactgcttataaatgttgattaaaatagcattctaataattttctttttatgtaaattatgttgaaggcaatggttgatcaaatagttg |
9358 |
T |
|
| Q |
311 |
actccgcagatataatgctaagatcttgggagagtagaattgaaagtgatggagtagtttc |
371 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9359 |
actccacagatataatgctaagatcttgggagagtagaattgaaagtgatggagtagtttc |
9419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 183 - 371
Target Start/End: Original strand, 19206905 - 19207093
Alignment:
| Q |
183 |
caattgacaacactaatggtattgctgtcacatacaactaactgcttataaatgttgattaaaatagcattctaataattttctttttatgtaaattatg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||| |
|
|
| T |
19206905 |
caattgacaacactaatggtattgctgtcacatacaactaagtgcttataaatgttgattaaaatatcattgtaataattttctgtttatgtaaatcatg |
19207004 |
T |
|
| Q |
283 |
ttgaaggcaatggttgatcaaatagttgactccgcagatataatgctaagatcttgggagagtagaattgaaagtgatggagtagtttc |
371 |
Q |
| |
|
||||||||||||||||||| | || || ||||| || | ||| || |||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
19207005 |
ttgaaggcaatggttgatcgagtaatttactccacaaacatactgataagatcttgggagagtagaatagaaagagatggagtagtttc |
19207093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 19206559 - 19206608
Alignment:
| Q |
11 |
cagagaaagataattgcgcctgagttgtacctagacaaggtgaaggtaag |
60 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
19206559 |
cagaggaagataatcgcgcctgaattgtacctagacaaggtgaaggtaag |
19206608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 343
Target Start/End: Original strand, 25196481 - 25196626
Alignment:
| Q |
198 |
atggtattgctgtcacatacaactaactgcttataaatgttgattaaaatagcattctaataattttctttttatgtaaattatgttgaaggcaatggtt |
297 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||| ||||||||||||||||| |||| ||| || |||||||||||||||| | |||||||||||||||| |
|
|
| T |
25196481 |
atggtatttatgtcaaatacaactaacttcttttaaatgttgattaaaattacattttaacaaatttctttttatgtaaacaacgttgaaggcaatggtt |
25196580 |
T |
|
| Q |
298 |
gatcaaatagttgactccgcagatataatgctaagatcttgggaga |
343 |
Q |
| |
|
| ||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
25196581 |
gggacaatagttgactccacaaatataatggtaagatcttgggaga |
25196626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 6586592 - 6586653
Alignment:
| Q |
127 |
gctatagaactatagtatagtggaatttgcacaaaacgctatttcttcgcaatccacaattga |
189 |
Q |
| |
|
||||||||||||| | |||| |||||||| ||||| |||||||| | |||||||||||||||| |
|
|
| T |
6586592 |
gctatagaactattgcatagaggaatttgaacaaaccgctattt-tccgcaatccacaattga |
6586653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University