View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19018_low_2 (Length: 468)
Name: NF19018_low_2
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 23697098 - 23697539
Alignment:
| Q |
20 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23697098 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgagggatgta |
23697197 |
T |
|
| Q |
120 |
ctcgcatttcatgcaggtatagacaattctcttttgttaagaattctacttttgcatttttattttgggtgcttgcttaaatattagttattctgctttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23697198 |
ctcgcatttcatgcaggtatagacaattctcttttgttaagaattctacttttgcatttttatttttggtgcttgcttaaatattagttattctgctttg |
23697297 |
T |
|
| Q |
220 |
atttgtaagaaaaaatttggcatattgattttatccgcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattataa |
319 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23697298 |
atttgtaaaaaaaaatttgtcatattgtttttatccgcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattataa |
23697397 |
T |
|
| Q |
320 |
gtgtgcaactggatagaaatggcatgacgagtgaaattgcatagcacaacgttacatcaattgcttgattgatgtatatttgaaaatatgattgtgatat |
419 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23697398 |
gtgtgcaactggatagaaattgcatgacgagtgaaattgcatagcacaacgttacatcaattgcttgattgatatatatttgaaaatatgattttgatat |
23697497 |
T |
|
| Q |
420 |
gtaatattgagtaggagttttatttttgtttcttgttctgtg |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23697498 |
gtaatattgagtaggagttttatttttgtttcttgttttgtg |
23697539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 23700834 - 23700682
Alignment:
| Q |
20 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgca |
119 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| || | |
|
|
| T |
23700834 |
cgagggatggaagatctaatggccatggaacttgcaaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgta |
23700735 |
T |
|
| Q |
120 |
ctcgcatttcatgcaggtatagacaattctcttttgttaagaattctactttt |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
23700734 |
ctcgcatttcatgcaggtatattcaattctcttttgttaaaaattctactttt |
23700682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 23694967 - 23695057
Alignment:
| Q |
20 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattg |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
23694967 |
cgagggagggaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattg |
23695057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 23700648 - 23700587
Alignment:
| Q |
256 |
gcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattat |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || ||||||||| | | ||||||||| |
|
|
| T |
23700648 |
gcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattat |
23700587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 8148963 - 8148820
Alignment:
| Q |
31 |
agatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttca |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||||||| ||||||| |||| |||||||||||| |||| | || || | || |||| | |
|
|
| T |
8148963 |
agatctaatggctctggaacttgctaagaaaaagaaatggaaaaggtgtccaagatgcaacttctatgtggaaaaaaaaggtggatgtaatcacattaga |
8148864 |
T |
|
| Q |
131 |
tgcaggtatagaca--attctcttttgttaagaattctactttt |
172 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
8148863 |
tgcaggtatagacaatattttcttatgttaagaattctactttt |
8148820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University