View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19018_low_6 (Length: 321)
Name: NF19018_low_6
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 52262894 - 52262599
Alignment:
| Q |
11 |
ttatactactcatattcccataattgcaccaaactccaatgcgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactct |
110 |
Q |
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| T |
52262894 |
ttatactactcatattcccataattgcacctaactccaatgtgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactct |
52262795 |
T |
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| Q |
111 |
tttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcgg |
210 |
Q |
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| T |
52262794 |
tttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaataggttttcgagaaatcgg |
52262695 |
T |
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| Q |
211 |
atttgtttaagagaattgtgaagggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatg |
306 |
Q |
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| T |
52262694 |
atttgtttaagagaattgtgaagggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatg |
52262599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 52251248 - 52250958
Alignment:
| Q |
12 |
tatactactcatattcccataattgcaccaaactccaatgcgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactctt |
111 |
Q |
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||||| || |||||||| ||||||||||| || ||||| ||||||||||| ||||||| || || |||||||||||| |||||| | | |||||| |
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| T |
52251248 |
tataccacacatattccaataattgcacctaagaacaatgtgaattcttatt---tcaataagaggcagactcagaggaaccagaaaactgcatactctg |
52251152 |
T |
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| Q |
112 |
ttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcgga |
211 |
Q |
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| T |
52251151 |
ttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttcttataatgatgatcaagttttggagaaatctgt |
52251052 |
T |
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| Q |
212 |
tttgtttaagagaattgtga-agggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttat |
305 |
Q |
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| T |
52251051 |
aatgtatcagagagctatgacaggga-atttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttat |
52250958 |
T |
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