View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19018_low_7 (Length: 303)
Name: NF19018_low_7
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 3711235 - 3710983
Alignment:
| Q |
14 |
catcaacaacgcaacaccgaaattagcactcacttactactcataacaattgacagacacaactttataacattcatatattaaattgaaaagtaagttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3711235 |
catcaacaacgcaacaccgaaattagcactcacttactactcataacaattgacagacacaactttataacattcatatattaaattgaaaagtaagttt |
3711136 |
T |
|
| Q |
114 |
atttatattcagattcaatcaaatagcccttgaaaaagttgattttctgtcaaaactaaatttctattcaattgcaaccaaatagacctttaagaaaagt |
213 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3711135 |
atttatattcaaattcaatcaaatggcccttgaaaaagttgattttctgtcaaaactaaatttctattcaattgcaaccaaatagacctttaaaaaaagt |
3711036 |
T |
|
| Q |
214 |
ttattttcagtcaaaactaaacaaaactatatttgtattcaactacaaccaaa |
266 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3711035 |
ttcttttcagtcaaaactaaacaaaactatatttgtattcaactgcaaccaaa |
3710983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 3711936 - 3711780
Alignment:
| Q |
15 |
atcaacaacgcaacaccgaaattagcactcacttactactcataacaattgacagacacaactttataacattcatatattaaattgaaaagtaagttta |
114 |
Q |
| |
|
||||||||| ||||| ||||| || ||| ||| |||| |||| |||||||| ||||| ||||| |||||||||||| ||||||| |||||| || ||| |
|
|
| T |
3711936 |
atcaacaacataacactgaaat-agaacttactcactagtcatgacaattgatagacataactt-ataacattcataggttaaattaaaaagttagctta |
3711839 |
T |
|
| Q |
115 |
tttatattcagattcaatcaaatagcccttgaaaaa-gttgattttctgtcaaaactaa |
172 |
Q |
| |
|
||| | ||| || ||||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
3711838 |
tttgtgctcaaatgcaatcaaatgacccttgaaaaatgttgattttctgttaaaactaa |
3711780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 3711419 - 3711320
Alignment:
| Q |
21 |
aacgcaacaccgaaattagcactcacttactactcataacaattgacagacacaactttataacattcatatattaaattgaaaagtaagtttatttata |
120 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||| |||||||| |||| ||| ||| ||||||||||||||||||| |||||| || |||| | || |
|
|
| T |
3711419 |
aacgcaacactgaaattagcactcact---tattcatgacaattgatcgacataac-ttagaacattcatatattaaattaaaaagttagcttatctgta |
3711324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 3710689 - 3710642
Alignment:
| Q |
127 |
ttcaatcaaatagcccttgaaaaa--gttgattttctgtcaaaactaa |
172 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
3710689 |
ttcaatcaaatagctcttgaaaaaaagttgattttctgtcaaaactaa |
3710642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 3710708 - 3710636
Alignment:
| Q |
167 |
aactaaatttctattcaattgcaaccaaatagacctttaagaaaagtttattttcagtcaaaactaaacaaaa |
239 |
Q |
| |
|
|||||||||| ||| ||||| ||| ||||||| ||| || ||||||| |||||| ||||||||||| ||||| |
|
|
| T |
3710708 |
aactaaatttgtatccaatttcaatcaaatagctcttgaaaaaaagttgattttctgtcaaaactaagcaaaa |
3710636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University