View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19018_low_8 (Length: 267)
Name: NF19018_low_8
Description: NF19018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19018_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 33860691 - 33860454
Alignment:
| Q |
14 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
113 |
Q |
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| T |
33860691 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
33860592 |
T |
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| Q |
114 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33860591 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctcgatgaatttgtattgttccgatccttctctccaatcatg |
33860492 |
T |
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| Q |
214 |
ctcactgtcagctatacagaaacgaaacatgccataat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33860491 |
ctcactgtcagctatacagaaacgaaacatgccataat |
33860454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 33870978 - 33870741
Alignment:
| Q |
14 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
113 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||||||| |||| |||||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
33870978 |
ttatacttttgccaaagcccctgcaaactttcccttcccatgggatcttcaaatgaaccctctttggcgtatcaatcattagaggagtaaccaagtgggc |
33870879 |
T |
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| Q |
114 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatg |
213 |
Q |
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| T |
33870878 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctcgatgaatttgtattgttccgatccttctctccagtcatg |
33870779 |
T |
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| Q |
214 |
ctcactgtcagctatacagaaacgaaacatgccataat |
251 |
Q |
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||| |||| |||||||||||||||||||||||||||| |
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| T |
33870778 |
ttcagtgtctgctatacagaaacgaaacatgccataat |
33870741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 33875569 - 33875332
Alignment:
| Q |
14 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
113 |
Q |
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||||||||||||||||| | ||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| | ||||| | |
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| T |
33875569 |
ttatacttctgccaaagcctctgcaaactttcccttcccatgggctcttcaaatgaaccctcctcggcataccaatcattagaggagtaagcaagtgggc |
33875470 |
T |
|
| Q |
114 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatg |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
33875469 |
gatgtgctgcaaatattaaccatggttgttgttttctatctacagttgcaaggtaatgctcgatgaatttgtactgttccgatccttctctccagtcatg |
33875370 |
T |
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| Q |
214 |
ctcactgtcagctatacagaaacgaaacatgccataat |
251 |
Q |
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||||||||| |||||||||||| ||||||||||||||| |
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| T |
33875369 |
ctcactgtctgctatacagaaatgaaacatgccataat |
33875332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 42784501 - 42784270
Alignment:
| Q |
20 |
ttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggacgatgtg |
119 |
Q |
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||||||||||||| ||||||||| ||||||||||| || ||| |||||| || ||| | |||||||| | |||||| || || || |||||| | |
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| T |
42784501 |
ttctgccaaagtctctgcaaactttcccttcccattggctctgcaaatgacccttccattccataccaaaagtcagaggaatatccaagcacacgatgcg |
42784402 |
T |
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| Q |
120 |
ctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatgctcact |
219 |
Q |
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| T |
42784401 |
cagcaaagatcaaccagggttgtttttgtctgtccactgttgcaagacaatgctcgatgaatttgtactgttcagatccttctcgccaatcatgttcagt |
42784302 |
T |
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| Q |
220 |
gtcagctatacagaaacgaaacatgccataat |
251 |
Q |
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||||||||| ||||| |||||||||||||||| |
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| T |
42784301 |
gtcagctatgcagaagcgaaacatgccataat |
42784270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 20003611 - 20003693
Alignment:
| Q |
167 |
caatgctctatgaatttgtattgttccgatccttctctccaatcatgctcactgtcagctatacagaaacgaaacatgccata |
249 |
Q |
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|||||||| ||||| ||||||||||| | |||||||||||||||||| ||| |||| || | ||||||||| ||||||||||| |
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| T |
20003611 |
caatgctcaatgaacttgtattgttctgttccttctctccaatcatgttcagtgtctgcgacacagaaacggaacatgccata |
20003693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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