View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19019_high_13 (Length: 212)
Name: NF19019_high_13
Description: NF19019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19019_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 14656535 - 14656375
Alignment:
| Q |
16 |
aatatcatccatcagtctaagaaagattgaaaaaatccaattcatcaaatccataaaa-acgttggagcattagtaagtcttaaagatatgaccagaatt |
114 |
Q |
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| T |
14656535 |
aatatcacccataggtctaagaaaggttgaaaaaatccaattcatcaaatccctaaaagacgttggagcattagtaagtcttaaaggtataaccagaatt |
14656436 |
T |
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| Q |
115 |
tttacaatgctcgtagcatgtgtgaaaagttgtctttgatatatgttcactcttaatatcca |
176 |
Q |
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| T |
14656435 |
tt-acaatgctcgtagcatgtgcgaaaagttgtctttgatatatgttcacttttaatatcca |
14656375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 7686141 - 7685989
Alignment:
| Q |
16 |
aatatcatccatcagtctaagaaagattgaaaaaatccaattcatcaaatccataaaa-acgttggagcattagtaagtcttaaagatatgaccagaatt |
114 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||| | |
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| T |
7686141 |
aatatcacccatcagtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattagtaagtcctaaaggtataaccagaa-t |
7686043 |
T |
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| Q |
115 |
tttacaatgctcgtagcatgtgtgaaaagttgtctttgatatatgttcactctt |
168 |
Q |
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||||||||||| |||||| ||| |||||||||||||||||||||||| ||||| |
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| T |
7686042 |
tttacaatgcttgtagcaggtgcaaaaagttgtctttgatatatgttccctctt |
7685989 |
T |
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